Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02244 ATGTCGAAGAGAGGTCGCGGTGGATCGGCGGGGAACAAGTTCAGGATGTCACTGGGTTTGCCAGTGGCGGCGACGGTGAACTGCGCCGACAACACCGGCGCGAAGAACCTCTACATCATATCGGTGAAGGGGATCAAGGGAAGGCTGAACCGGTTGCCGTCGGCGTGCGTCGGAGACATGGTTATGGCAACCGTCAAGAAGGGAAAACCCGATCTCCGTAAGAAGGTTTTGCCTGCCGTTATCGTCCGTCAGCGCAAGCCCTGGCGCCGAAAGGACGGAGTCTACATGTACTTCGAAGATAATGCTAGTGTGATTGTGAATCCCAAAGGTGAAATGAAAGGTTCTGCTATTACTGGTCCAATTGGGAAGGAGTGTGCTGATCTGTGGCCCAGGATTGCTAGTGCTGCCAATGCTATTGTTTAA 423 0.5366 MSKRGRGGSAGNKFRMSLGLPVAATVNCADNTGAKNLYIISVKGIKGRLNRLPSACVGDMVMATVKKGKPDLRKKVLPAVIVRQRKPWRRKDGVYMYFEDNASVIVNPKGEMKGSAITGPIGKECADLWPRIASAANAIV 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02244 140 Gene3D Ribosomal protein L14 1 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca03g02244 140 Hamap 50S ribosomal protein L14 [rplN]. 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca03g02244 140 Pfam Ribosomal protein L14p/L23e 22 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca03g02244 140 SUPERFAMILY Ribosomal protein L14 11 140 IPR036853 GO:0003735|GO:0005840|GO:0006412
Cca03g02244 140 SMART Ribosomal_L14_2 19 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
Cca03g02244 140 ProSitePatterns Ribosomal protein L14 signature. 79 105 IPR019972 -
Cca03g02244 140 PANTHER 60S RIBOSOMAL PROTEIN L23 1 140 - -
Cca03g02244 140 PANTHER 50S/60S RIBOSOMAL PROTEIN L14/L23 1 140 IPR000218 GO:0003735|GO:0005840|GO:0006412
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02244 Cca-Chr3 43282893 43284460 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02244 1 140 Cytoplasmic Ribosomal Protein Gene Family AT1G04480 97.143 4.19e-98 276
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02244 K02894 - gmx:100811636 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02244 03 43282893 43284460 Cca03g02244 03 43282893 43284460 ECH
Cca03g02244 03 43282893 43284460 Cca02g00979 02 25995150 25996719 PCT