Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02242 ATGTTACATAGTACCACCACCACTCCAATCACCGAGACTGGGCTTCACGCGCCACATTCGCGCGTAAGGTTGGCAGCGTCTATTCCTCCAAAAGGGACCAAAGCGCATTCCTTCGTCACCGTTCACTCTCGCTCGCCAGCACCCAACCTTGCCCTTGCCGAACAAAAATCAACCTTTGTAGAGTTTTTCTGGAAAATTATGGAAGCACGTCCTGCTTTCTCCATTGAAAGATCAAGTGCTAAGCAACTCACTAACATGGGGATGTCTGAAGCGCTCCATTCATCGTTGCCTGTCCTACCAAACCCTCTAGAAGAGACATACCCCAAATTATCTGATTCTCAGTCAGCTTTTACAGATAAAGAGCTTGGAACAAAACCTTTTACTCATTCAAGTCATTTAACTTCCAGTGGAGCAGTTGGGCATATGTTTTCATCTTCTCCTGGATATTCGACTGATCTTCATCACTCATCCTTTTCATCTCATGAAAAACAACACCCTAGAAATACTCATTTTATTTCACAGTCGTTGAGTAACATGGCTTCATTGCCATTATCTTATTCTTCAAATAGTGGACCAGTGCCTTCTACAACGTCAACCCCTTATTCCAATGGTAACAGTGTTTCCTGGCATACAGATCCCCTGCCTACCTTTCTTGATTTCCCTGTCAATACCTCCATTGATAATAATCAAGTAGAAAGCAGTGCCTGCAATATTGTGGCAACTGAAGAGTATTCTAAGAGAAATGATTGGCAGGAGTGGGCTGACCAGTTAATCAGTGATGATGATACTTTGACTTCTAATTGGAATGATCTTCTTGCTGACAACATTCAAGATCTTGAACCAAAGGTGGTGTACCAGGTCTCAAAATCATCTTCACAAGTTCTGATAGGACGCCAATCCCAAAGCCATCAACAACTTCCCACTTTATCTGGAGAAAATCGTGTTGGTGTTGCCCCATCTTCCTCAGCAAATTCTGTACCTGCCAAGCCACGGATGCGGTGGACACCTGAGCTTCATGAGGCATTTGTAGAGGCTGTCAACCAACTTGGTGGGAGTGAAAGAGCTACCCCTAAAGGTGTGCTAAAGCTCATGAAAGTTGAAGGATTAACTATATATCATGTTAAAAGTCACTTACAGAAATACAGGACAGCTAGATATAGACCCGAGTCATCTGAAGGAGCTGCAGAGAAAAAACTAAGTCCAATTGAAGAGATGTCATCTCTAGATTTGAAAACTGGTATTGAAATCACTGAAGCTCTGCGACTGCAGATGGAAGTTCAGAAGCGTTTGCATGAGCAGCTTGAGATTCAAAGAAATCTACAGTTGCGAATTGAAGAACAAGGAAGGTACCTTCAGATGATGTTTGAGAAGCAGTGCAAATCTGGCGTTGAAACATTTAAGGCTTCATCCTCTGCCATCGAGAGTCCATCTGGAGTGTCTTCTGATGCCATGAAAGATTCTCCTGCCAAAACTGAATCAGCAACCGTCAAAGTGGACAATTGCAAGTCAGGACCTGATCAAGCTAATGGCAGTACCCCAGTTGAGGAAAGCCCATCTGAAGTGGGTGAAAAGCAGGATGCTCCTGAAAGTCTAGCTTCTGAGAATCCTAAGAAACATGCTAGTGAAGATAGTGCTCAAGCCCCAAAGCGTCAAAGGACGGAGGAGTAA 1668 0.4376 MLHSTTTTPITETGLHAPHSRVRLAASIPPKGTKAHSFVTVHSRSPAPNLALAEQKSTFVEFFWKIMEARPAFSIERSSAKQLTNMGMSEALHSSLPVLPNPLEETYPKLSDSQSAFTDKELGTKPFTHSSHLTSSGAVGHMFSSSPGYSTDLHHSSFSSHEKQHPRNTHFISQSLSNMASLPLSYSSNSGPVPSTTSTPYSNGNSVSWHTDPLPTFLDFPVNTSIDNNQVESSACNIVATEEYSKRNDWQEWADQLISDDDTLTSNWNDLLADNIQDLEPKVVYQVSKSSSQVLIGRQSQSHQQLPTLSGENRVGVAPSSSANSVPAKPRMRWTPELHEAFVEAVNQLGGSERATPKGVLKLMKVEGLTIYHVKSHLQKYRTARYRPESSEGAAEKKLSPIEEMSSLDLKTGIEITEALRLQMEVQKRLHEQLEIQRNLQLRIEEQGRYLQMMFEKQCKSGVETFKASSSAIESPSGVSSDAMKDSPAKTESATVKVDNCKSGPDQANGSTPVEESPSEVGEKQDAPESLASENPKKHASEDSAQAPKRQRTEE 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02242 555 MobiDBLite consensus disorder prediction 470 555 - -
Cca03g02242 555 MobiDBLite consensus disorder prediction 470 518 - -
Cca03g02242 555 Gene3D - 328 387 - -
Cca03g02242 555 Pfam Myb-like DNA-binding domain 331 382 IPR001005 -
Cca03g02242 555 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 329 383 IPR006447 GO:0003677
Cca03g02242 555 MobiDBLite consensus disorder prediction 298 328 - -
Cca03g02242 555 Pfam MYB-CC type transfactor, LHEQLE motif 414 461 IPR025756 -
Cca03g02242 555 PANTHER PROTEIN PHR1-LIKE 1-LIKE ISOFORM X1 94 555 - -
Cca03g02242 555 Coils Coil 417 437 - -
Cca03g02242 555 SUPERFAMILY Homeodomain-like 327 383 IPR009057 -
Cca03g02242 555 PANTHER MYB FAMILY TRANSCRIPTION FACTOR PHL7-LIKE 94 555 IPR044848 GO:0003700
Cca03g02242 555 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 327 386 IPR017930 -
Cca03g02242 555 MobiDBLite consensus disorder prediction 530 555 - -
Cca03g02242 555 MobiDBLite consensus disorder prediction 298 330 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02242 Cca-Chr3 43262642 43269323 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02242 67 518 G2-like Transcription Factor Family AT4G28610 48.812 5.75e-112 338
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Cca03g02242 Myb_DNA-binding 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02242 - - gmx:100810560 836.254
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02242 03 43262642 43269323 Cca03g02242 03 43262642 43269323 ECH
Cca02g00982 02 26064259 26073755 Cca03g02242 03 43262642 43269323 ECH
Cca03g02242 03 43262642 43269323 Cca02g00982 02 26064259 26073755 PCT