Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02241 ATGACAACTTTTCAAAAGGTTCATGCTCTTATCTTTCTCATGCTTTTGATATCTTTGCTTCCCTTGAAAATCACAGCATCACCAAGAACAGAAGCAGAAGCCATTGTGAAATGGAAAAATACTCTATCCCCTCCTCTTCCTCCCTCTCTAAACTCTTCATGGTCCCTCACCAACCTTGGCAACCTTTGCAATTGGGATGCCATTGTTTGTGACAACACCAACTCAACAGTCTCCGAGATAAACTTGTCTGGTTACAATCTCACTGGGACTCTCATTGGCTTGGACTTTGCTTCCCTTCCTAACCTCACCCAACTCAACCTCAATGCCAACAATTTTGGTGGTTCAATACCATCAGCAATTGGCAACCTCTCCAAGCTGACTTTTTTGGACTTGAGTCACAACTTATTTGAAGACATACTGCCCTATGAGCTAGGGCAGCTAAGAGAACTTCAATATCTTAATTTTTATTACAACAATCTCAATGGTACCATTCCCTATCAGCTCATGAATCTCCCTAAGGTAAGGTACCTGGACTTTGGATCAAACTACTTTATAAGTCCTTTTGAGTGGTCAAAATATTCAGGCATGCCTTCCTTAACTTACCTTGCTTTGGATCTCAATTACTTCACTGCTGAATTCCCAAGATTCATACTGGAGTGCCAGAACTTGACATACCTTGACATCTCTCAGAATCAGTGGAATGGCACCATACCTGAATCCTTGTATAGCAATTTGGCCAAGCTGGAATACCTCAACCTCACCAATTGTGGCCTTCAAGGGAAACTGTCACCCAACTTGTCCATGCTTTCTAATCTCAAAGAACTTCGTATAGGTAATAACATGTTTAATGGTTCTGTTCCCACTGAGATAGGATTGATATCTGGGCTTCAAATTCTTGAATTGAATAACATTTCTGCCAATGGGAAAATTCCTTCTTCATTAGGCCAACTCAGGGAGCTCCGGTACCTTGATCTCAGTAATAATTTTTTGAATTCTACAATCCCTTCTGAGCTTGGCCTATGCACAAATCTAACCTTTTTGAGTTTAGCAATGAATAGTTTGACTGGTCCTTTGCCTTTGTCATTAGCTAATCTGGCTAAAATATCACAATTGGGATTATCAGAGAATTCCTTTTCTGGTCAACTTTCTGCTTCATTCGTCTCTAACTGGACTCAGTTGATCTCCTTGCAAGTTCAAAACAATAAATTTGCAGGAAAGATTCCTCCACAGATTGGCCTGTTGAAAAAAATTAATTACCTCTATCTGTACAATAATCTATTCTCTGGTTCAATTCCTGTAGAGATTGGAAATCTGAAGGAAATGATAGAGTTGGACCTTTCCCAAAACCAATTCTCTGGTCAAATTCCATCAACACTTTGGAATCTGACAAACATTCAAGTCATGAATCTTTTCTTCAATGAGCTCTCTGGAACCATTCCCATGGATATTGGAAACTTAACCTCACTGCAAATCTTTGATGTCAACACCAATAACTTGTATGGGGAGTTGCCAGAGACCATTACTCAACTAACTGTTTTAAGAAATTTTTCTGTGTTCACCAATAACTTCACTGGCAGCATTCCCAGAGAATTTGGAAAGAGTAATCCTGCTTTGACTCATATCTATCTTTCAAATAACAGCTTCTCCGGAGAACTGCCTCCTGACTTGTGCAATGATGGGAATCTAATTATCTTGGCAGTCAATAACAACAGCTTTTCAGGGCCATTGCCAAAGTCATTCAGAAATTGTTCATCACTAACTAGAGTTCGGCTTGATGATAACCATTTCACTGGAAGCATCACAGACGCATTTGGGGTACTCCCAAATCTTGTTTTTATCTCACTTAGTAGAAATCAGCTTGTTGGTGAGCTCTCCCCGGAGTGGGGTGAATGTGTCAACTTAACTCTGATGGATATGGGAAGCAACAAACTTTCCGGAAAAGTTCCATCTGAACTAAGTAAGTTGAGTCAATTGAGGTATCTAAGCCTTCATTCCAATGAATTCACTGGCAATATCCCACCTGAAATTGGAAATCTAGGCCAGCTTTTCATGTTCAACTTGAGTAGTAACCATTTATCAGGAGAAATCCCAAAGAATTATGGCAGATTGGCTCAGCTAAATAATCTTGATTTGTCAAATAACAACTTCAGTGGAAGAATTCCTAGAGAACTCGGTGATTGTGGTCGCTTGCTGAGTCTGAATTTAAGCCACAACAATCTATCTGGGGAGATACCATATGAACTTGGCAATCTGTTCTCACTCCAAATCATGTTGGACCTCAGCAGCAACTCTCTCTCTGGGGCTCTTCCCCAAAACCTTGAAAAGTTAGCATCATTGGAGATTCTCAATGTCTCACACAACCATCTATCAGGGAAAATCCCACAATCATTTTCAAGCATGCTCAGCCTTCAATCTATTGATTTTTCTTACAACAACTTGAGTGGTAGAATCCCCACAGGTGGTGTTTTTCAGACAGCAACTGCTGAAGCCTATGTTGGGAACAATGATTTGTGTGGTGAGGTAAAAGGATTAACTTGCCCCAAAGTGTCTTCCCCAGGCAAATCTGGAGGGGTAAACAAAAAGGTTCTTCTTGGTGTTATCATACCGGTTTGTTGCTTATTTATTGGGATGATTGGTGTTGGAGTCCTATTATGCAGGCAGCACGCCAAAAAACGCCTTGATGAAGAGTCCAAAAGCATTGAAAAAAGTGATCAGTCTATTAGCATGGTGTGGGGAAGAGATGGGAAATTCACATTTTCTGAACTTGTTAAGGCCACAGATGACTTTAATGACAAGTACTGCATTGGAAAGGGAGGATTTGGAAGTGTTTATAGAGCACATTTACTCACAGGTCAAGTTGTTGCTGTTAAAAGGCTGAACATATCAAACTCTGACGAAATTCCTGCGGTGAACCGCCAGAGCTTTGAGAATGAGATAAAATCACTTACAGGAGTGAGGCACCGCAATATAATAAAGCTTTATGGGTTCTGCTCTTGGAGGGGACAAATGTTCTTGGTTTATGAACATGTAGAGAGAGGAAGTTTGGGGAAAGTATTGTATGGAGAGGAAGGAAAATTGGAACTAAGGTGGGCTACAAGGCTTAAAATTGTGCAGGGAATAGCACATGCGATATCATACTTGCATACTGACTGCTCCCCACCCattgtgcaccgggatattacattgaataacattctactagactcagattttggacctcgccttgcagattttggcacagcaaagctgctaagctccaacacttcaacctggacctcggttgctggatcctatggctacatggctccagAACTAGCACAAACCATGAGGGTGACTGACAAGTGTGACGTGTATAGCTTTGGAGTGGTGGTGTTGGAGATAATGATGGGAAAGCATCCTGGAGAACTGTTGACTAGGATGCATTCAAACAAGTACTTGTCATCAATGGAGGAAGCAGAGGTGCTACTGAAGGATGTGCTTGACCAACGGCTTCCACCTCCAACGGGCCAATTAGCAGAAGCAGTAGTGTTCACAGTGACCATAGCGTTGGCATGCACACGTGTGGCTCCAGAGTCCAGACCCATGATGCGTTCTGTGGCACAAGAACTATCAGCCACTACGCAGGCTTATCTTGCCGAGCCTTTTGGCATGATAACCATAAGCAAGCTTACAGGGTTCCAGAAATAG 3687 0.3982 MTTFQKVHALIFLMLLISLLPLKITASPRTEAEAIVKWKNTLSPPLPPSLNSSWSLTNLGNLCNWDAIVCDNTNSTVSEINLSGYNLTGTLIGLDFASLPNLTQLNLNANNFGGSIPSAIGNLSKLTFLDLSHNLFEDILPYELGQLRELQYLNFYYNNLNGTIPYQLMNLPKVRYLDFGSNYFISPFEWSKYSGMPSLTYLALDLNYFTAEFPRFILECQNLTYLDISQNQWNGTIPESLYSNLAKLEYLNLTNCGLQGKLSPNLSMLSNLKELRIGNNMFNGSVPTEIGLISGLQILELNNISANGKIPSSLGQLRELRYLDLSNNFLNSTIPSELGLCTNLTFLSLAMNSLTGPLPLSLANLAKISQLGLSENSFSGQLSASFVSNWTQLISLQVQNNKFAGKIPPQIGLLKKINYLYLYNNLFSGSIPVEIGNLKEMIELDLSQNQFSGQIPSTLWNLTNIQVMNLFFNELSGTIPMDIGNLTSLQIFDVNTNNLYGELPETITQLTVLRNFSVFTNNFTGSIPREFGKSNPALTHIYLSNNSFSGELPPDLCNDGNLIILAVNNNSFSGPLPKSFRNCSSLTRVRLDDNHFTGSITDAFGVLPNLVFISLSRNQLVGELSPEWGECVNLTLMDMGSNKLSGKVPSELSKLSQLRYLSLHSNEFTGNIPPEIGNLGQLFMFNLSSNHLSGEIPKNYGRLAQLNNLDLSNNNFSGRIPRELGDCGRLLSLNLSHNNLSGEIPYELGNLFSLQIMLDLSSNSLSGALPQNLEKLASLEILNVSHNHLSGKIPQSFSSMLSLQSIDFSYNNLSGRIPTGGVFQTATAEAYVGNNDLCGEVKGLTCPKVSSPGKSGGVNKKVLLGVIIPVCCLFIGMIGVGVLLCRQHAKKRLDEESKSIEKSDQSISMVWGRDGKFTFSELVKATDDFNDKYCIGKGGFGSVYRAHLLTGQVVAVKRLNISNSDEIPAVNRQSFENEIKSLTGVRHRNIIKLYGFCSWRGQMFLVYEHVERGSLGKVLYGEEGKLELRWATRLKIVQGIAHAISYLHTDCSPPIVHRDITLNNILLDSDFGPRLADFGTAKLLSSNTSTWTSVAGSYGYMAPELAQTMRVTDKCDVYSFGVVVLEIMMGKHPGELLTRMHSNKYLSSMEEAEVLLKDVLDQRLPPPTGQLAEAVVFTVTIALACTRVAPESRPMMRSVAQELSATTQAYLAEPFGMITISKLTGFQK 1228
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02241 1228 Gene3D Ribonuclease Inhibitor 28 190 IPR032675 -
Cca03g02241 1228 SUPERFAMILY L domain-like 334 531 - -
Cca03g02241 1228 Gene3D Transferase(Phosphotransferase) domain 1 1010 1213 - -
Cca03g02241 1228 Gene3D Ribonuclease Inhibitor 191 483 IPR032675 -
Cca03g02241 1228 SUPERFAMILY Protein kinase-like (PK-like) 907 1203 IPR011009 -
Cca03g02241 1228 Pfam Leucine rich repeat 758 813 IPR001611 GO:0005515
Cca03g02241 1228 Pfam Leucine rich repeat 197 258 IPR001611 GO:0005515
Cca03g02241 1228 ProSiteProfiles Leucine-rich repeat profile. 125 146 IPR001611 GO:0005515
Cca03g02241 1228 SUPERFAMILY L domain-like 535 826 - -
Cca03g02241 1228 CDD STKc_IRAK 935 1203 - -
Cca03g02241 1228 SMART LRR_typ_2 800 825 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 486 510 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 99 122 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 123 146 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 438 462 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 607 631 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 317 341 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 776 799 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 536 559 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 703 727 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 269 293 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 147 171 IPR003591 -
Cca03g02241 1228 SMART LRR_typ_2 655 679 IPR003591 -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 176 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 193 311 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 416 1204 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 296 417 - -
Cca03g02241 1228 Gene3D Phosphorylase Kinase; domain 1 889 1009 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 193 311 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 416 1204 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 296 417 - -
Cca03g02241 1228 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 29 176 - -
Cca03g02241 1228 ProSiteProfiles Leucine-rich repeat profile. 319 341 IPR001611 GO:0005515
Cca03g02241 1228 Pfam Leucine Rich Repeat 320 337 IPR001611 GO:0005515
Cca03g02241 1228 Pfam Leucine Rich Repeat 538 558 IPR001611 GO:0005515
Cca03g02241 1228 Pfam Protein kinase domain 931 1166 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02241 1228 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1055 1067 IPR008266 GO:0004672|GO:0006468
Cca03g02241 1228 ProSitePatterns Protein kinases ATP-binding region signature. 935 957 IPR017441 GO:0005524
Cca03g02241 1228 SUPERFAMILY RNI-like 79 402 - -
Cca03g02241 1228 Gene3D Ribonuclease Inhibitor 484 848 IPR032675 -
Cca03g02241 1228 ProSiteProfiles Protein kinase domain profile. 929 1211 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02241 Cca-Chr3 43252054 43256565 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02241 1 649 Receptor kinase-like Gene Family AT4G08850 31.029 2.76e-79 280
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g02241 Pkinase 5.2e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02241 - - gmx:100809137 2044.63
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02241 03 43252054 43256565 Cca03g02241 03 43252054 43256565 ECH