Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02240 ATGAAGAAAACTTTTCAGCTGACAATTTTCTCTCTGGTTTTGTGTTGTATACTTGGAGAGATTTCTGCACAGAAAGAAGCAGAGTCTCTTAGAACCTGGATATACAGTTTGAACTCTCCCTTGTCACCTTCATGGAACAAGAGCAATAATCCATGCAAATGGACTGGCATTACTTGTAACAAAGAAGGAAGTGTTGTTGAGATAAAGCTTCCCAATGCAGGCTTAGATGGAACACTTAACAGGTTTGACTTCTCAGCCTTTTCTAACCTCACCAACTTCAATGTAAGTTTGAATAACCTGGTTGGAGAGATACCATCTGGAATTGGAAATGCAACAAAGCTGAAAATACTTGATTTGAGTAGCAACAATTTCACCTTTCCAATCCCCTCAGAAATAGGAAACCTCCAACAGCTTCAAGTTCTTAGTCTCGATAATAATTCCCTCTTAAATCAAATACCAGTTCAACTGAGCAATTTGCAGAATCTATGGTTCCTTGATCTAGGGGCTAATTATTTGGAGAATCCTGACCCAGTTCAGTTTAAGGGCATGGCATCCTTAACTGAACTCAATCTCAATTTTAACTATCTCACAGAGGTTCCCCCATTTGTGTCTAAATGTCCTAAGCTTGTGTCTCTTGATTTATCACTCAACAACATCACTGGGCAGATTCCAGTACACTTACTAGCAAGTCTCAGGAATTTGAAAATCCTAGACATGAAAGCAAACAACTTAGAAGGGCTAATTCCAGCAGAAATTAAGAACCTTTCAAACATCAAGCACCTTAAGCTTGGACAAAACAAGCTTAATGGTACTATACCAAAGGAGATTGGTCTCTTGTCAAACCTTGAGGTGCTTGAATTGAATCAAAATGTCTTCCAAGGTCCAATACCATCATCAATTGGTAATCTCCGAAAGCTTCGGAGATTGGATCTTCACAAGTCAGGACTAAATTCCAGTATCCCAGCTGAGATAGGCTTCTGCACCAACCTTACTTATCTTGATATGTCAGGAAATAGCTTCACAGGTTCCTTGCCTAATTCCATGGCTTCATTAACAAGGATTAGAGAGTTGGCAATATCTTTTAACCATTTATCTGGAGAACTTCATCCATCTCTTCTTTCCAGTTGGCCAGAACTCATTTCTTTGCAACTCCAGTTGAATGAACTATCAGGAAGACTTCCACCTGAGATTGGTTCACTTCACAATATAACTATCTTGCTCCTTTTTTCCAACCAGTTTTCTGGCCAGATACCTTCAGAAATTGGAAACTTATCGAGCTTACAATATCTTGATCTGTCCTACAACTCTTATAAGGGTTCAATCCCACCGACCATTGGAAAGTTACACAATCTCATAAACTTAAATCTGGCCTCAAACCAACTAAGTGGAGCCTTTCCTCCTGAAATATGTGATTTGGAAAGCTTACAGGCACTGGACTTGAGTGGAAACAAGCTTGCAGGACCTTTGCCTTCATCAATAATCCGTTTGAAAAATATCAATCTACTTTATCTTCATGCCAACAATTTCTCAGGAACTATTCCTGAAGATTTTGGACCTGCCTTTTTAAGCAATGTTAGTTTTGCCAACAATAGCTTCTCCGGAAAGCTCCCGCCAGGAATATGCAGTGGCGGAAATCTTATCTACTTGGCAGCCAGTATGAATAATCTAACAGGTCCAATCCCAGAAAGTCTGAGAAACTGCACCGGACTAATCAGAGTGGTGCTTGGAAACAATCTTCTCAGTGGAGACATTACTGATGCATTTGGTATATATCCACACCTGGACTTCATTGATTTAGCACACAACCATCTCTATGGTTTGTTATCAAGTAACTGGGGAGAGTGCAAAACTCTCTCAAGTTTCAGCATAGCTTCCAATAAGCTACAGGGAAACATTCCTCCAAAGCTTGGAAAATTGCTAAGGATGCAAAATCTTGACCTGTCCGAAAACAATCTCACAGGAAGTATCCCAGAGAAGCTTTTTAGTTCATCTTCTAAACTACTCAAGCTAAATTTGAGAAAAAATGATCTCTGGGGTCAGATACCAACAGAGATAGGAGAACTGTCACAACTGCAGCATCTGGATTTATCAGCAAACAATCTGAGTGGTCCAATTCCAAAAGAACTAGGAAACTGCCAGAAACTTATATTCTTGAAACTAAGTATGAACAACTTAGATGGACACATGCCACATGAGCTTGGGAATTTGGTGAACTTGCAGCCACTGTTAGATCTCAGTCATAACTCACTAACCGGTCAGATAATCACACAGCTGGAAAATTTGATATCACTGGAGGTTCTGAATCTTTCTCATAATCAGTTTTCTGGGACAATACCTTCTGGTCTCAAAGGACTAATCAGCCTTCAGTCAATTGATATATCCTACAACAAACTTGAAGGTCTCCTCCCAGACCAAGAAGCTTTTCATAATGCTCCAGCAGAAGCACTGGTTGGCAATGCAGGTCTATGTGCTGGTCCTGATGGCAATGCAAATCTGAACCCATGTGGTGGAGGAAAAACCAATAAAGATGATAAACATAAGCTAATAATTGTTGTAGTCATTCCACTTGCTGCCTTAATCATTCTATTGGTTTCCCTTCGAGTCTTCGTTTTTCGGCATCATCATAGAGTTGATCAAGATGAAAAGGACAAGAGTTCAAACACAAAGGACTTATTCTTTATATGGAACTACAAGAATACAATAGAGTTCAAGGATATATGTGCTGCAGCTGAGAATTTCAGTGATGAGTATTGCATAGGGATAGGAGGACAGGGCAGTGTCTACAAGGCAATGCTTCCAACAGGTGAGACTTTTGCGGTGAAACGTCTTCACCAACATGAAGAAATGGACTTACCTGCATACCAAACAAAGAATTTCAGGTCTGAAATTCTTGCAATGACTAACATTCGTCATCGAAATATTGTAAAACTGTGTGGCTTTAGTTACTTGCATGGATCCATGTTTTTCATATATGAGTACGTAGAAAGAGGCTCTTTGGCAAAGGTGTTGCAGAAGGATCAGGAGGCAAAGACCTTGACCTGGGACATAAGGTTAAACATGATAAAAGGGTTGGCAAATGCATTGTCTTACCTGCATCATGACTGCATACCCATAATTGTTCACCGTGACATTTCAGGAAACAATATTCTGTTGGACTCGGAATATGAGCCTAAGATATCTGACTTTGGTACAGCGAGGTTGCTTAAAACTGGAGAATCAAATTGGACAGCACCAGCTGGTTCATGTGGCTACATGGCACCAGAGCTTGCATTGTCAATGAAGGTGACAGAAAAATGTGATGTTTACAGTTTTGGGATTGTTGCATTAGAAATTCTGGTAGGGAGGTACCCTCATGAGCTCCTTTTGTGTCTAGAGTCTGGGGAATTTAATCAAAACTTTTTAGATTTCCTAGATAAGAGGCTGACTCCTCCTGAAGGTACTGCAGCTCAACTCCTAATGTTTGTAGCAAGCCTGATGCTGAAATGTATTGATAAGAATCCTTTGTGTCGACCCACCATGCATCATGTGTCCCAAGGGTTGCTCACACTCCCTGTCCCTAGCTTTCAACATGACCACACTGCACAATCATCTACCCAACAAATAGACTGTGAGATTGAGATGTCAACTACACTTTAG 3636 0.4032 MKKTFQLTIFSLVLCCILGEISAQKEAESLRTWIYSLNSPLSPSWNKSNNPCKWTGITCNKEGSVVEIKLPNAGLDGTLNRFDFSAFSNLTNFNVSLNNLVGEIPSGIGNATKLKILDLSSNNFTFPIPSEIGNLQQLQVLSLDNNSLLNQIPVQLSNLQNLWFLDLGANYLENPDPVQFKGMASLTELNLNFNYLTEVPPFVSKCPKLVSLDLSLNNITGQIPVHLLASLRNLKILDMKANNLEGLIPAEIKNLSNIKHLKLGQNKLNGTIPKEIGLLSNLEVLELNQNVFQGPIPSSIGNLRKLRRLDLHKSGLNSSIPAEIGFCTNLTYLDMSGNSFTGSLPNSMASLTRIRELAISFNHLSGELHPSLLSSWPELISLQLQLNELSGRLPPEIGSLHNITILLLFSNQFSGQIPSEIGNLSSLQYLDLSYNSYKGSIPPTIGKLHNLINLNLASNQLSGAFPPEICDLESLQALDLSGNKLAGPLPSSIIRLKNINLLYLHANNFSGTIPEDFGPAFLSNVSFANNSFSGKLPPGICSGGNLIYLAASMNNLTGPIPESLRNCTGLIRVVLGNNLLSGDITDAFGIYPHLDFIDLAHNHLYGLLSSNWGECKTLSSFSIASNKLQGNIPPKLGKLLRMQNLDLSENNLTGSIPEKLFSSSSKLLKLNLRKNDLWGQIPTEIGELSQLQHLDLSANNLSGPIPKELGNCQKLIFLKLSMNNLDGHMPHELGNLVNLQPLLDLSHNSLTGQIITQLENLISLEVLNLSHNQFSGTIPSGLKGLISLQSIDISYNKLEGLLPDQEAFHNAPAEALVGNAGLCAGPDGNANLNPCGGGKTNKDDKHKLIIVVVIPLAALIILLVSLRVFVFRHHHRVDQDEKDKSSNTKDLFFIWNYKNTIEFKDICAAAENFSDEYCIGIGGQGSVYKAMLPTGETFAVKRLHQHEEMDLPAYQTKNFRSEILAMTNIRHRNIVKLCGFSYLHGSMFFIYEYVERGSLAKVLQKDQEAKTLTWDIRLNMIKGLANALSYLHHDCIPIIVHRDISGNNILLDSEYEPKISDFGTARLLKTGESNWTAPAGSCGYMAPELALSMKVTEKCDVYSFGIVALEILVGRYPHELLLCLESGEFNQNFLDFLDKRLTPPEGTAAQLLMFVASLMLKCIDKNPLCRPTMHHVSQGLLTLPVPSFQHDHTAQSSTQQIDCEIEMSTTL 1211
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02240 1211 SUPERFAMILY L domain-like 368 633 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 128 283 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 275 466 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 96 197 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 444 1180 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 373 564 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 199 368 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 34 140 - -
Cca03g02240 1211 Gene3D Ribonuclease Inhibitor 493 833 IPR032675 -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 275 466 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 373 564 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 128 283 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 34 140 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 96 197 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 444 1180 - -
Cca03g02240 1211 PANTHER LEUCINE RICH REPEAT FAMILY PROTEIN, EXPRESSED 199 368 - -
Cca03g02240 1211 PRINTS Leucine-rich repeat signature 642 655 - -
Cca03g02240 1211 PRINTS Leucine-rich repeat signature 688 701 - -
Cca03g02240 1211 Gene3D Ribonuclease Inhibitor 180 271 IPR032675 -
Cca03g02240 1211 SUPERFAMILY RNI-like 68 390 - -
Cca03g02240 1211 Pfam Protein kinase domain 916 1177 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02240 1211 ProSiteProfiles Protein kinase domain profile. 913 1188 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02240 1211 SUPERFAMILY Protein kinase-like (PK-like) 887 1178 IPR011009 -
Cca03g02240 1211 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Cca03g02240 1211 Gene3D Ribonuclease Inhibitor 23 179 IPR032675 -
Cca03g02240 1211 ProSitePatterns Tyrosine protein kinases specific active-site signature. 1039 1051 IPR008266 GO:0004672|GO:0006468
Cca03g02240 1211 SMART serkin_6 913 1181 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02240 1211 ProSiteProfiles Leucine-rich repeat profile. 185 206 IPR001611 GO:0005515
Cca03g02240 1211 Pfam Leucine rich repeat 426 485 IPR001611 GO:0005515
Cca03g02240 1211 Pfam Leucine rich repeat 165 219 IPR001611 GO:0005515
Cca03g02240 1211 Pfam Leucine rich repeat 232 290 IPR001611 GO:0005515
Cca03g02240 1211 Pfam Leucine rich repeat 642 701 IPR001611 GO:0005515
Cca03g02240 1211 Pfam Leucine rich repeat 743 798 IPR001611 GO:0005515
Cca03g02240 1211 Pfam Leucine rich repeat 304 364 IPR001611 GO:0005515
Cca03g02240 1211 SMART LRR_typ_2 639 663 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 688 712 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 785 810 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 255 279 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 761 784 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 231 254 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 183 206 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 472 496 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 303 327 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 424 448 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 135 159 IPR003591 -
Cca03g02240 1211 SMART LRR_typ_2 351 375 IPR003591 -
Cca03g02240 1211 Gene3D Ribonuclease Inhibitor 272 371 IPR032675 -
Cca03g02240 1211 Gene3D Ribonuclease Inhibitor 372 492 IPR032675 -
Cca03g02240 1211 Gene3D Phosphorylase Kinase; domain 1 874 993 - -
Cca03g02240 1211 SUPERFAMILY L domain-like 575 826 - -
Cca03g02240 1211 Gene3D Transferase(Phosphotransferase) domain 1 994 1203 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02240 Cca-Chr3 43231669 43235631 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02240 7 658 Receptor kinase-like Gene Family AT4G08850 32.507 4.05e-89 309
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Cca03g02240 Pkinase 3.1e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02240 - - ccaj:109803789 2399.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02240 03 43231669 43235631 Cca03g02240 03 43231669 43235631 ECH