Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02231 ATGGGGAGTAGGGTTAAGCAGGGGAAAGGATTGCAGAAGATGATGAAGTGTCTGTGCCTGAGGGAGCCATTGAAAGGAGAAGATAAAAAGGTTCCTTCCGCGGAATCTCTTGCAATCAAGGAATTTTATTCTCCAACGGCAGGCCGTTCTGGTATCGGTAGAGAAATTGAGACGGGGTCGGCTTCCGGCAACATAGGAGAAGTCGAATTGTTCATGCGTGAGAGTGGCATCTTGGACAATGAGGAAGCTAGAGCTTTGTTAGCGAAAGATGAATATCAGGACGGGAATATAGAAGCTGCTTTACGTATTTATGAGAGAATAAACATTGGTGCTGTGACTCACAAGATCAGAATTTTCCTAGCCAAAAGCAGAGAACGCCGTAAGAAACAGTCTCATTATTATGCTACTCCTCCAATGTCCATATACACGGCTGGATTAATGTTGGAAGCAGTTTTCCTGAAAGCAAAATGTTTGCAGCATCTAGGGAGGTTTGAAGAAGCTGCCCAAACTTGTAAAGTTATTCTGGACATCGTTGAGTCTTCATCAAATGAAGGCTTGCCTCAAAATTTTGGCGGAGAGTGTAAATTTCAGGAGACTTTGAGAAAGGCAGTTGAGCTACTTCCTGAATTTTGGAAGCTTACCGAGTCTCCACGTGAAGTTATCTTGTCTTACCGTCGTGCAATTCTTCACCAGTGGAATCTTGATGCAAAAACCATAGCAAAGATTCAAAAAGAATTTGTTATTTTTCTTCTATATAGTGGAGGGGAAGCAATCCCCTCAAATCTTCGTTCTCATATGGACAGCTCGTTTGTACCCAAAAGCAACTTAGAAGAGGCTATACTTCTTTTAATGATTTTGCTAAGAAAAATATCTCTAAATAAAATTGAGTGGGATCCGTCAATTTTGGATCACCTTTCATTTGCTCTATCTGTTTCAGGAGATTTGTCAACTTTAGCCAATCAATGGGAAGAATTACTCCCTGGAACTATCAATCGAAGAGAAAGGTACCATGCCCTTGCTCTTTGTTATTATGGCGCAGGTAATGACTTGGTAGCACTGAATCTTCTTAGGAAATTGTTGAGTAGTAGTGAGGACCCAAAACATGTTTCTGCTTTGTTAATGGCTTCCAAGATTTGTTGTGAGCACCCTGATCTTGCAAAAGATGGGTCAAGCCTAGCCCGCAAAGTGCTTGATTACTTGGACGGAAAATGTGATCAGTTGGAAAGTCTTGCCAGTTTCTTACTCGGTGTTTCACTGTCAGCACACTCAAAATTTGCTATTTCTGATTCTGAGAGGTTTGAGAGTCAATCTGAGGCACTTCATTCCCTGGAAACTGCGAGTAAAGTGACCCGAATGAGTAACCCCCTTGTAATATACTATTTGAGTTTAGAATGTGCAGAGCAAAGGAAGTTGGATGATGCACTTCATTATGCAAAATGCTTTCTAGACTTGGAAGGTGGGTCTAATGTTCAAGGGTGGTTATTGTTAGCCCGGATATTATCGGCTCAAAAACAGTTTTTGGATGCTGAATCTATTGTCAATGATGCTTTGGATCAGACTGGAATATGGGATCAAGGAGAGTTATTGCGAACAAAAGCTAAACTGCAAATTGCACAAGGCCAGTTGAAGAGTGCCATTGAAACATACACTCAGCTTCTTGCTATTCTCCTGGTTCAGAGAAAGTCTTTTGGTTCAAGGAAGAAGCTGTATAAGGACTACATAGATCATGCTAGGAACATGGAAGTGGAAATATGGCATGATCTTGCTTATGTATACATAAGTCTGTCACGGTGGCATGATGCAGAGGTACAATGTACGAAACAAAGGGCCTTTACAAAGAGGCTTTAA 1848 0.4134 MGSRVKQGKGLQKMMKCLCLREPLKGEDKKVPSAESLAIKEFYSPTAGRSGIGREIETGSASGNIGEVELFMRESGILDNEEARALLAKDEYQDGNIEAALRIYERINIGAVTHKIRIFLAKSRERRKKQSHYYATPPMSIYTAGLMLEAVFLKAKCLQHLGRFEEAAQTCKVILDIVESSSNEGLPQNFGGECKFQETLRKAVELLPEFWKLTESPREVILSYRRAILHQWNLDAKTIAKIQKEFVIFLLYSGGEAIPSNLRSHMDSSFVPKSNLEEAILLLMILLRKISLNKIEWDPSILDHLSFALSVSGDLSTLANQWEELLPGTINRRERYHALALCYYGAGNDLVALNLLRKLLSSSEDPKHVSALLMASKICCEHPDLAKDGSSLARKVLDYLDGKCDQLESLASFLLGVSLSAHSKFAISDSERFESQSEALHSLETASKVTRMSNPLVIYYLSLECAEQRKLDDALHYAKCFLDLEGGSNVQGWLLLARILSAQKQFLDAESIVNDALDQTGIWDQGELLRTKAKLQIAQGQLKSAIETYTQLLAILLVQRKSFGSRKKLYKDYIDHARNMEVEIWHDLAYVYISLSRWHDAEVQCTKQRAFTKRL 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02231 615 Gene3D Tetratricopeptide repeat domain 428 609 IPR011990 GO:0005515
Cca03g02231 615 SUPERFAMILY TPR-like 438 607 IPR011990 GO:0005515
Cca03g02231 615 PANTHER PROTEIN NPG1 7 611 IPR043376 -
Cca03g02231 615 PANTHER TETRATRICOPEPTIDE-LIKE HELICAL DOMAIN-CONTAINING PROTEIN-RELATED 7 611 - -
Cca03g02231 615 Gene3D Tetratricopeptide repeat domain 63 416 IPR011990 GO:0005515
Cca03g02231 615 SUPERFAMILY TPR-like 148 367 IPR011990 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02231 Cca-Chr3 43155400 43160666 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02231 9 609 Calmodulin-binding Proteins AT4G28600 52.451 0.0 587
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02231 K21843 - gmx:100784353 995.727
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02231 03 43155400 43160666 Cca03g02231 03 43155400 43160666 ECH
Cca02g00986 02 26145235 26151146 Cca03g02231 03 43155400 43160666 PCT