Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02222 ATGGATCATGTTATTGCTGGGAAGTTTAAACTGGGAAGGAAGATTGGAAGTGGGTCTTTTGGGGAGCTTTATATAGCTGTTAATATACAAACTGGAGAGGAGGTAGCTGTCAAGCTGGAACCTGTGAAGACCAAGCATCCCCAGCTTCACTATGAGTCAAAATTGTATATGCTTCTTCAAGGAGGAACGGGGATTCCCCATCTCAAGTGGTTTGGAGTAGAGGGAGACTACAATATCATGGCAATCGATCTTCTTGGACCTAGTCTAGAAGATTTGTTCAATTATTGCAACCGGAAGCTAACATTGAAAACAGTGTTAATGCTTGCTGATCAATTAATTAACAGAGTTGAATATATGCATTCTAGAGGTTTCCTTCACCGTGACATTAAGCCAGACAATTTTTTGATGGGCCTGGGACGTAAAGCAAACCAGGTGTACATCATTGACTATGGCCTTGCAAAAAAGTATAGGGATCTTCAGACTCATAGGCACATACCATACAGGGAAAACAAGAACCTTACAGGCACAGCTCGGTATGCAAGTGTCAACACTCATCTTGGAATTGAACAAAGCAGAAGGGATGATCTGGAATCTCTTGGTTATGTGCTCATGTACTTCTTAAGAGGAAGTCTTCCTTGGCAGGGACTGAAGGCTGGCACCAAAAAACAAAAATATGATAAAATCAGCGAGAAGAAAATGTCAACTCCTATAGAGGTTCTCTGCAAATCATATCCCTCGGAGTTTGTATCATATTTCCATTACTGCCGATCATTGCGGTTTGAGGACAAACCTGATTATTCATATTTAAAGAGGCTCTTTCGAGATTTATTTATTCGAGAAGGCTATCAATTTGACTATGTTTTTGATTGGACTATATTGAAGTATCCACAGATTGGTGGCAGCTCTAGAGGGCGGCACGACAGTGGCAAGGCAGCCATGCATGCCGGACCATCTGTACAAAAGCCAGAAAAGATATCAGTTGGGAAAGAGATTCGAGAAAAATTCTCTGGTGCTGTTGATGTTTTCTCCCGGAGGAACCCAACAAATTCTAGTCCACGCGGTGATCACTCCAAACATAGGGGTTTTGAGGAAGTAGCAGTACACAAGGATGGGTATCATGATCAAGAGAAGGGACGCAATTCATCTCGATATGGCAGCAGCTCAAGGAGAGCCATAATCTCATCGTCTACCCGGCCAAGTTCCTCCGGCGATCATACTGACAGTCGTACTGGCCGGCTAACCTCAAGTGGTAGCCGTCCAGCTACTGCACATAAAAATATTCAACCTATGTATGAAACCAAACAGCCCTCTTACACGCGCACTGGATCCAGCAGAGGCAACCGCGATGATCCTCTCCGGAGTTTTGAGCTCCTCTCTATCAGGAAGTAA 1389 0.437 MDHVIAGKFKLGRKIGSGSFGELYIAVNIQTGEEVAVKLEPVKTKHPQLHYESKLYMLLQGGTGIPHLKWFGVEGDYNIMAIDLLGPSLEDLFNYCNRKLTLKTVLMLADQLINRVEYMHSRGFLHRDIKPDNFLMGLGRKANQVYIIDYGLAKKYRDLQTHRHIPYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYDKISEKKMSTPIEVLCKSYPSEFVSYFHYCRSLRFEDKPDYSYLKRLFRDLFIREGYQFDYVFDWTILKYPQIGGSSRGRHDSGKAAMHAGPSVQKPEKISVGKEIREKFSGAVDVFSRRNPTNSSPRGDHSKHRGFEEVAVHKDGYHDQEKGRNSSRYGSSSRRAIISSSTRPSSSGDHTDSRTGRLTSSGSRPATAHKNIQPMYETKQPSYTRTGSSRGNRDDPLRSFELLSIRK 462
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02222 462 MobiDBLite consensus disorder prediction 446 462 - -
Cca03g02222 462 PANTHER CASEIN KINASE-RELATED 1 450 - -
Cca03g02222 462 MobiDBLite consensus disorder prediction 381 445 - -
Cca03g02222 462 ProSiteProfiles Protein kinase domain profile. 9 278 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02222 462 SUPERFAMILY Protein kinase-like (PK-like) 4 290 IPR011009 -
Cca03g02222 462 SMART serkin_6 9 287 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02222 462 MobiDBLite consensus disorder prediction 301 462 - -
Cca03g02222 462 Gene3D Transferase(Phosphotransferase) domain 1 1 335 - -
Cca03g02222 462 MobiDBLite consensus disorder prediction 351 380 - -
Cca03g02222 462 ProSitePatterns Protein kinases ATP-binding region signature. 15 38 IPR017441 GO:0005524
Cca03g02222 462 PANTHER CASEIN KINASE I-LIKE PROTEIN 1 450 - -
Cca03g02222 462 MobiDBLite consensus disorder prediction 325 339 - -
Cca03g02222 462 ProSitePatterns Serine/Threonine protein kinases active-site signature. 124 136 IPR008271 GO:0004672|GO:0006468
Cca03g02222 462 CDD STKc_CK1_delta_epsilon 8 282 - -
Cca03g02222 462 Pfam Protein kinase domain 10 227 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02222 Cca-Chr3 43024754 43030846 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02222 2 213 Miscellaneous Gene Families AT1G29230 27.397 8.47e-13 68.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CK1_CK1 Cca03g02222 Pkinase 2.9e-25 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02222 K08960 - gmx:100781494 847.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02222 03 43024754 43030846 Cca03g02222 03 43024754 43030846 ECH
Cca03g02222 03 43024754 43030846 Cca02g00991 02 26219922 26240791 PCT