Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02221 ATGGATTCTGCGAGGAGTTGGTTACAAAAGTTTCAGCCACGTGATAGATTAAGGGCCTCTACGAGGAAAAAAGATGATACTCATGGTGGAAACGAAGTTCCAAATGAGCCTATGGATGAAGAAACTCTTTCCAATATCACAAAGCAGAAGGTTGCAGCAGCCAAGCAGTACATAGAGAACCACTACAAGGAACAAATGAAGAGCCTTCAAGAGAGGAAGGAGCGTCGAACCATCTTGGAAAAGAAGTTGGCCGATGCTGATGTCTCTGAGGAAGATCAAAATAACCTACTTAAATTTTTAGAGAAAAAGGAAACTGAATATATGCGTCTTCAAAGGCACAAAATGGGTGTTGATGATTTTGAGTTATTGACTATGATTGGAAAAGGTGCATTTGGGGAGGTTAGAGTTTGTAAGGAAAAAACTTCAGATCATGTATATGCAATGAAAAAGTTAAAGAAATCAGAGATGCTTCGTAGAGGCCAGGTAGAACATGTTAGAGCTGAGAGGAATCTCCTTGCAGAGGTTGACAGCAATTGCATAGTTAAACTTTATTGTTCATTTCAAGATGATGAGTATCTATATCTTATTATGGAGTATCTACCTGGTGGGGATATGATGACTCTACTGATGAGAAAGGATACCTTGACTGAAGATGAAACTCGATTTTACGTCGGAGAAACAGTTTTGGCTATTGAATCTATACATAAACACAATTATATACATAGGGATATTAAGCCTGATAACTTATTACTTGATAAATACGGACACTTGAGACTATCAGATTTTGGACTATGTAAACCATTAGATTGTAGTACACTTGAAGAAACAGATTTTTCTACAAATCAAAATGCAAATGGGTCAACCCAAAATGACGAACAAGCAGCTCCAAAACGCACACAACAAGAACAATTACAACATTGGCAGAAGAATCGAAGGACACTCGCTTATTCTACTGTTGGTACACCAGATTATATTGCTCCAGAAGTTTTGTTGAAGAAAGGTTATGGGATGGAATGTGATTGGTGGTCACTTGGAGCTATTATGTATGAAATGTTGGTAGGATATCCACCTTTTTATTCTGATGATCCAATGTCAACATGTAGGAAGATAGTAAATTGGAAATCTCACTTAAAATTTCCCGAAGAAGCAAGATTAACTTTTGAGGCTAAAGATCTTATAAGCAAACTTTTGTGTAATGTGAACCAAAGGTTGGGCTCAAATGGTGCAAATGAAATAAAGGCCCATCCATTTTTTGATGGTGTTGAATGGGATAAACTGTATCAAATGGAAGCTGCATTTCTTCCTGAGGTCAATGATGAGTTAGATACTCAAAATTTTGAAAAGTTTGAAGAGGCTGACAGCCAGACTCAATCATCATCAAGAGCTGGTCCGTGGAGGAAGATGCTTTCGTCTAAAGACTTGAATTTTGTGGGATACACATATAAGAACTTTGAAATTGTCAACGATTATCAAGTTCCTGGGATGGCTGAGTTAAAAAAGAAAACCTCTAAAGCAAAGAGACCATCTGTCAAGTCCCTATTTGATTCTGAGTCTGAGGCATCCGAAATGGTTGAGGGTCCAAATTCATCTGGAAGCATAATTAGGAATGATGGTCTACCCCCTCAACCTGAATAG 1635 0.3792 MDSARSWLQKFQPRDRLRASTRKKDDTHGGNEVPNEPMDEETLSNITKQKVAAAKQYIENHYKEQMKSLQERKERRTILEKKLADADVSEEDQNNLLKFLEKKETEYMRLQRHKMGVDDFELLTMIGKGAFGEVRVCKEKTSDHVYAMKKLKKSEMLRRGQVEHVRAERNLLAEVDSNCIVKLYCSFQDDEYLYLIMEYLPGGDMMTLLMRKDTLTEDETRFYVGETVLAIESIHKHNYIHRDIKPDNLLLDKYGHLRLSDFGLCKPLDCSTLEETDFSTNQNANGSTQNDEQAAPKRTQQEQLQHWQKNRRTLAYSTVGTPDYIAPEVLLKKGYGMECDWWSLGAIMYEMLVGYPPFYSDDPMSTCRKIVNWKSHLKFPEEARLTFEAKDLISKLLCNVNQRLGSNGANEIKAHPFFDGVEWDKLYQMEAAFLPEVNDELDTQNFEKFEEADSQTQSSSRAGPWRKMLSSKDLNFVGYTYKNFEIVNDYQVPGMAELKKKTSKAKRPSVKSLFDSESEASEMVEGPNSSGSIIRNDGLPPQPE 544
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02221 544 MobiDBLite consensus disorder prediction 522 536 - -
Cca03g02221 544 ProSiteProfiles Protein kinase domain profile. 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02221 544 Pfam Protein kinase domain 121 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02221 544 PANTHER NON-SPECIFIC SERINE/THREONINE PROTEIN KINASE 4 523 - -
Cca03g02221 544 Pfam Protein kinase C terminal domain 437 481 IPR017892 GO:0004674|GO:0005524|GO:0006468
Cca03g02221 544 ProSitePatterns Protein kinases ATP-binding region signature. 126 149 IPR017441 GO:0005524
Cca03g02221 544 MobiDBLite consensus disorder prediction 498 544 - -
Cca03g02221 544 SUPERFAMILY Protein kinase-like (PK-like) 93 471 IPR011009 -
Cca03g02221 544 ProSiteProfiles AGC-kinase C-terminal domain profile. 419 491 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca03g02221 544 MobiDBLite consensus disorder prediction 1 43 - -
Cca03g02221 544 ProSitePatterns Serine/Threonine protein kinases active-site signature. 239 251 IPR008271 GO:0004672|GO:0006468
Cca03g02221 544 MobiDBLite consensus disorder prediction 9 35 - -
Cca03g02221 544 MobiDBLite consensus disorder prediction 499 513 - -
Cca03g02221 544 Gene3D Transferase(Phosphotransferase) domain 1 204 436 - -
Cca03g02221 544 Gene3D Phosphorylase Kinase; domain 1 118 447 - -
Cca03g02221 544 SMART serkin_6 120 418 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02221 544 PANTHER SERINE/THREONINE-PROTEIN KINASE 4 523 - -
Cca03g02221 544 SMART pkinase_C_6 419 483 IPR000961 GO:0004674|GO:0005524|GO:0006468
Cca03g02221 544 CDD STKc_NDR_like 118 482 - -
Cca03g02221 544 MobiDBLite consensus disorder prediction 279 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02221 Cca-Chr3 43009597 43014642 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02221 1 517 AGC Kinase Gene Family AT2G20470 78.327 0.0 855
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK AGC_NDR Cca03g02221 Pkinase 1.2e-62 CL0016
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02221 03 43009597 43014642 Cca03g02221 03 43009597 43014642 ECH
Cca03g02221 03 43009597 43014642 Cca02g00065 02 1065967 1075982 PCT
Cca02g00993 02 26256021 26265483 Cca03g02221 03 43009597 43014642 PCT