Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02217 ATGGGTCTCAGAGACATTGGTGCTTCACTGCCTCCAGGGTTTAGGTTCTATCCGAGTGATGAGGAATTGGTGTGTCACTACCTCTACAAAAAGATCGCAAATGAGCAAGTTCTGAAGGGTACCTTGGTTGAAATTGACCTTCACATATGCGAACCATGGCAACTTCCTGAGGTGGCGAAGCTGAACGCGAACGAGTGGTACTTCTTCAGCTTCAGGGACCGCAAATATGCGACGGGGTTTCGGACCAATAGGGCAACGACATCTGGATACTGGAAAGCGACGGGGAAGGATCGTACGGTGATGGATCCAGCCACGCAAGAGGTTGTAGGGATGAGGAAGACGTTGGTGTTCTACAGGAACAGAGCTCCGAATGGCATCAAAACGGGGTGGATCATGCATGAGTTCCGCTTGGAGACCCCACACATGCCTCCAAAGGAGGACTGGGTGTTGTGCAGAGTCTTCCACAAAAGCAAAGAAGAGAACAGTTCCAAACAACTCATGTATGAGACAACAACACCACCTTCGTCCCTAACTTTGGCTTCGTCATCTCCACCAAACCAAACCATGCCTCCTGGTGGGTACAACAGATTCTCCTCCTCCATGCCAACCCATCATCATCATCATTTCAACCCAAACCAAAGCACTTCTTTGCTCTTCTCTCGCACCAACACTACTCAAATTAGTTGCAAACCTCATGATGATGGATATGCCTTCTTGGACAGCCCCTGCCTTCCCTCAGACTTGGTTGCTCTTCATCATCATTTGAAGATGGAAGCAGATAATGGAAATGTTTGCACCTCATTTGAGAAGATGGAAAATCTTTCAGTTCCCCCTGGTTTTGCATCCCTAACATCTTTCATTTTGAAACGGAGTGGAAATGATAAGAAAATTGATAAATCTACAACCTTTCCAATTGCATCCGAACAAGAGCCGATTTGCATGGAGACTAAACCTGAGATGAATGACATTACTGCTTATAAGCAGGCTCTTATACATCGACCGTGGATAATCTTGGACCAGTGCAACCACCACAAACCCGAGGAATCTCAAACAGAGCATCTTCCAAGGGTTCTCCCTTTAAATTCTGGTCGTCCAAAAGGGACCATACATGGATGTCCAAACTGCCGTAATTGTCTGAAGGTGACAGCAAGGTGGCACCCTGAGGATTCAAGAAGAGAAGTTCTGGAAGAAGCTCCTATCTTCCACCCAACCGAAGAGGAATTCAAAGACACACTTAAATATATTGCAAGCATACGTACCAGAGCAGAACCTTATGGAATTTGCCGTATTGTCCCTCCAACTTGCTGGAAACCACCATGTGTTCTTGAGAAAAGTAACATATGGGAAAAGTCTGAATTTGTTGCTCAGATTCAGCGAATTGATGGACACCAAGTTCAGCATGCACAAGAAATTATGGCCAGTCGTGAAAATATAAAAACCAAGAGAAAAAGATATGTAAAAGTAGCCTTGGACTCTCAGGTTGGCAATAGAAACGCCGGCACCCCAAATAATCAGAATGTTGAAGAATGTTACTATGAGTCTGAACCTGGTCCTAAATTCAGTCTCCAGACATTTAAGAAATATGCAGATGAATTTAAGAGACAGTACTTCAATCATAAGGATAAGAATAAGATTATGCTTTCCAATATAAAAGCTATACGTCAACAGCAGTGGGAACCATCTGTGGAGAATATTGAGGGTGAATATGGACGGATTGCTCAAAATCCAACTGAAGAAATAAAGGTGCTTTGTGGTAACACTTTGGAAGCTGGAGTTTTTAGCAGTGGATTTCCATCGGTTTCTGATCCTTTGGAGGCATACACTTGCCCTGAATATTTGAAATCTGGATGGAACTTAAATAATATTCTTTCAGTGTCTGGTTCCCTTCTTTCTTTAGAAAGCTCTGAAGCTTTACGTAATTTTGCTCCCCAGATTCATGTGGGAATGTGCTTCTCTCCATTCAGCTGGAAAGTTGAAGAGCACCACTTATACGCCTTATCTTATGTTCATTTGGGTGAACCGAGAGTGTGGTATGGCATCCCAGGAAGATTTGCTGTTAACTTTGAAACAATTTGGAAGAAATATCTCCCAGATTTGGATGTAAGACAGCCTAATATGCATGATAATCTGGGGATGCAATTATCATGCTCCATATTGAAGGCGGAGGGTATACCTGTTTATCGATGTGTTCAGTATCCTGGTGAGTTTGTTCTTGTCTTCCCTGGGGCGTATCATTCGGGATTTGATTGTGGTTTCAACTGCTCTGAAGCAGTAAGTTTTGCTCCTATTGCATGGCTGCTTCACGGACAGAATGTTGTAGAGCTATATTGTGAACAGAGGAGAAAGACGTTACTTTCATATGATAAGCTTTTGCTAGGAGCAGCAAGGGAAGCTGTGAGGGTCCTATGGGAAACTAATCTGTGCATGAAGAGCACATCAGACAGCTTGACATGTAAAGATGTCTATCGAAGAAACGTGTTCTTAACAAAAGCTTTGAACTCTCGCATCCAGAGTGAAAGTTTGAAGAGGAAATTTCTTTGTACATATTTGGTATCACAAAGAATGGGTGAAAGTTTCGATGTCACTTGTAAAAGGGAATGTAGTATTTGCCTGCGTGATTTACACTTGTCTGCTGTAGCGTGTTCATGTTCAGATGACAAGTTTGCATGTCTTAATCATGCAAAACAGCTTTGTTCTTGTATTTGGAGCAACAAAATTCTCTTATACCGTTATGAAATCAGTGATTTGAATGTTCTTTGTCAAGCTTTGGATGGGAAATTGAGTGCAGTCTATAAATGGGCCAAAGAGGATCTCGGATTAAATCTGAACTCTGTTGCCTCCAAGAGATCAAAACAAAACCCAGAAAACGTAAGTGGTTCAACCTGCCCTTCACAAGGCTTGCAGATGAAAGAACCTATACCCCAGACAGCATCGGATGAATACTCAAAGGGGAAACGCCCTTCACAAAACTTGCAGATGGAAGAGTCCATGTCCCAGACAGAATCGGATGAATGCTCAATGGGGAAACGACGTAATTTGCAGGAAATATTGTATTCATCAAAAGAGAAACAAAGTGAATTGGTTTCGGGTCCATCAAAAAAGAAACAAAATCAAGTGGTTTCCCAAGTCATGCGAACTTCTGGTGGCACTCACAGTAGCTCTAATGACATTCATTCAACCTTTTCAGATGGTATGAAAGTAATCAATTCTGTTGGCACCAAAATTGACACGAAGGCAGTTGGGGCTAAGTTTACCATTTCAAAGAAAGTAGGAGAGCCGGAAGTATCTAAAGTTCCTCCAGTTATAAACTCGCGTTACTTGTCTTTTCTACAAGAAAACGTGTTGATTGAAGTTTCATCCGATAGTTCCAGCACATCTTCATCGTCAGATTCTGACAATGCATAA 3405 0.4253 MGLRDIGASLPPGFRFYPSDEELVCHYLYKKIANEQVLKGTLVEIDLHICEPWQLPEVAKLNANEWYFFSFRDRKYATGFRTNRATTSGYWKATGKDRTVMDPATQEVVGMRKTLVFYRNRAPNGIKTGWIMHEFRLETPHMPPKEDWVLCRVFHKSKEENSSKQLMYETTTPPSSLTLASSSPPNQTMPPGGYNRFSSSMPTHHHHHFNPNQSTSLLFSRTNTTQISCKPHDDGYAFLDSPCLPSDLVALHHHLKMEADNGNVCTSFEKMENLSVPPGFASLTSFILKRSGNDKKIDKSTTFPIASEQEPICMETKPEMNDITAYKQALIHRPWIILDQCNHHKPEESQTEHLPRVLPLNSGRPKGTIHGCPNCRNCLKVTARWHPEDSRREVLEEAPIFHPTEEEFKDTLKYIASIRTRAEPYGICRIVPPTCWKPPCVLEKSNIWEKSEFVAQIQRIDGHQVQHAQEIMASRENIKTKRKRYVKVALDSQVGNRNAGTPNNQNVEECYYESEPGPKFSLQTFKKYADEFKRQYFNHKDKNKIMLSNIKAIRQQQWEPSVENIEGEYGRIAQNPTEEIKVLCGNTLEAGVFSSGFPSVSDPLEAYTCPEYLKSGWNLNNILSVSGSLLSLESSEALRNFAPQIHVGMCFSPFSWKVEEHHLYALSYVHLGEPRVWYGIPGRFAVNFETIWKKYLPDLDVRQPNMHDNLGMQLSCSILKAEGIPVYRCVQYPGEFVLVFPGAYHSGFDCGFNCSEAVSFAPIAWLLHGQNVVELYCEQRRKTLLSYDKLLLGAAREAVRVLWETNLCMKSTSDSLTCKDVYRRNVFLTKALNSRIQSESLKRKFLCTYLVSQRMGESFDVTCKRECSICLRDLHLSAVACSCSDDKFACLNHAKQLCSCIWSNKILLYRYEISDLNVLCQALDGKLSAVYKWAKEDLGLNLNSVASKRSKQNPENVSGSTCPSQGLQMKEPIPQTASDEYSKGKRPSQNLQMEESMSQTESDECSMGKRRNLQEILYSSKEKQSELVSGPSKKKQNQVVSQVMRTSGGTHSSSNDIHSTFSDGMKVINSVGTKIDTKAVGAKFTISKKVGEPEVSKVPPVINSRYLSFLQENVLIEVSSDSSSTSSSSDSDNA 1134
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02217 1134 ProSiteProfiles JmjN domain profile. 398 439 IPR003349 -
Cca03g02217 1134 Gene3D NAC domain 19 161 IPR036093 GO:0003677|GO:0006355
Cca03g02217 1134 Pfam JmjC domain, hydroxylase 645 760 IPR003347 -
Cca03g02217 1134 SMART cupin_9 611 777 IPR003347 -
Cca03g02217 1134 Gene3D Cupin 383 761 - -
Cca03g02217 1134 SUPERFAMILY Clavaminate synthase-like 517 803 - -
Cca03g02217 1134 SUPERFAMILY NAC domain 8 156 IPR036093 GO:0003677|GO:0006355
Cca03g02217 1134 ProSiteProfiles NAC domain profile. 10 156 IPR003441 GO:0003677|GO:0006355
Cca03g02217 1134 PANTHER INACTIVE LYSINE-SPECIFIC DEMETHYLASE JMJ19-RELATED 337 1033 - -
Cca03g02217 1134 ProSiteProfiles JmjC domain profile. 611 777 IPR003347 -
Cca03g02217 1134 MobiDBLite consensus disorder prediction 164 191 - -
Cca03g02217 1134 SMART JmjN_1 397 438 IPR003349 -
Cca03g02217 1134 PANTHER LYSINE-SPECIFIC DEMETHYLASE 337 1033 - -
Cca03g02217 1134 MobiDBLite consensus disorder prediction 981 1003 - -
Cca03g02217 1134 Coils Coil 1133 1134 - -
Cca03g02217 1134 Pfam jmjN domain 399 432 IPR003349 -
Cca03g02217 1134 Pfam No apical meristem (NAM) protein 11 137 IPR003441 GO:0003677|GO:0006355
Cca03g02217 1134 MobiDBLite consensus disorder prediction 947 1009 - -
Cca03g02217 1134 Pfam C5HC2 zinc finger 867 917 IPR004198 -
Cca03g02217 1134 MobiDBLite consensus disorder prediction 162 191 - -
Cca03g02217 1134 MobiDBLite consensus disorder prediction 947 972 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02217 Cca-Chr3 42945875 42962138 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02217 264 978 JUMONJI Transcription Factor Family AT1G08620 45.430 0.0 595
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Cca03g02217 NAM 1.8e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02217 - - gmx:100804864 1322.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02217 03 42945875 42962138 Cca03g02217 03 42945875 42962138 ECH
Cca03g02217 03 42945875 42962138 Cca02g01003 02 26468149 26473839 PCT