Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02214 ATGCATATAGGTCAAACAAATACAACTTCAGTGAAATGTCTTGTCAACGGCATTTCTCGATTCATTCATCTAGTTTCTTGCCAAACAGTGAAACCAATGCCCCTTCAGAAGAATTGTAATAACATGGTTGGTGTTTTGAAGCGTTTGAAACCAATGCTCAATGATATTGTGGATAACAAAATCACTTTGGATGAAAATCTGTACAGAGAATGTGAAGAATTGGATATGTGGGTTAACGAAACTAGGGAGTTTATTGAAAAATGGGGCCCAAAGATGAGCAAGATTCACAGTGTTCTTCAAAGTGGGGAATTGTTGATTAAGATACAAAACTCTTCACTCAAGATTTGTCATATGATAGTTAGATCCCTAAAGTCACCTGCATCTGTTTCAATTTTGGCTAATCTTCAGCACTATATTCAGGAACTTCAATGTCTTGAGAAGGATCCTGCAATGGTCTATATAGAAGAAGCATTGAGAAATCAAAGGGATAATATTCAACCTTTCTATGATCATCTAAAGGAAATTATAGGGTTACTCAAATTTACATCAAACGAGGAGCTCCTGAAAGAAAGTATTGCCGTGGAAATGGAAAGGTCAAATGCTGAAGTCAATAAAACAAAAGGGGACTTGGATGAAATTAACCAAATTGTGAATCTTGTGTGCAATTTGCGTGATTATGTAATGAAAATTGAGCAGTCTGAAGTCAAAAGTGGTGTCTTAATTCCCCCGTACTTTCGATGTCCTTTATCATTGGAAATTATGTTGGATCCTGTTATTGTGGCTTCAGGTCAGACATATGAGAGGCAATCCATTCAAAAGTGGCTTGATCATGGGCTAACTGTTTGCCCCAACACTCATCAGAGACTTTTCCATACCAATCTCATTCCCAATTATACTGTAAAAGCTATGATAGCAAATTGGTGTGAGGAAAATAATGTCAAACTTCCCAGTAACTCTAAGCACAGTAATTCTGCTCATATTTCATCCCCCTCAGATCATTTATTACATCAAGAATTAGATTGTGTGTGTAGCTTTGAGTCTTCAGATAGTAGCATTTCCAATTTAGATCAAACTGGAACTGCATTTGAGAAGCAAAAGGATGATAACTCTTTCAGATCAAACAAGAAATCCAATGGATGCCAGAATGAAGAGACAGAAAAGTCTGAGCAACAATCCCCTGCACCTTCATGTAGTAACAGCAGAAGCGAATCATTTTCAAGTTCTATTTCTAGTACCGATTATGTACTTCCAGTTTCAAAAGAGGTGTCAAGCATATCTAATAAGCATCAAAATGTAGAGTTGTCTGGAGAAATTACTAATGGGTGTCCTACTTCTCCTGCATATAAGGAATTTGGGATTTATCCTTGGTCATCTGGAAAGCAATTTGATAGCCCTGGATCAAAAATTGGAAGAATGGAGAATGAAAATAAGTATAATGAGAATAACAATAATACAATCATTACTAGTCATTTGAAAGTTGATTCCCATCCTATTTCCAACTTAGGATCTGACGAGTTGATCACTGCATCCCATGTCAATGAGTTGATTGAAGACCTCCAGTGTCAATTGATTGAAACACAAACTGCTGCTGCAGAAAAATTGAGGCTCTATACCAAGCATAACATGGAGAATCGTATCATTGTAGGGCAGTGCGGAGCAATTATGCCTTTACTTTCACTGTTATATTCAGACATGAAGATAACACAAGAGCATGCTGTGACAGCTCTATTGAATTTGTCAATTTATGATAACAACAAAGCCTTGATTATGGAAGCAGGTGCCATAGAATCATTTATACATGTTTTGCAGACAGGAAATGATGGTGCCAAGGAGAATTCTGCAGCTGCTTTGTTCAGCCTCTCTGTCATGGATAAGAATAAGGCAAAAATTGGCCGTTCTGGTGCAGTTAAAGCTTTGGTGGATCTTCTAGCCTCTGGAACTCTTAGGGGAAAGAAGGATGCTGCAACTGCCTTATTCAACCTATCAATATTCCATGAGAATAAAGCACGTATAGTTCAAGCTGGAGCCGTGAAGTTTCTGGTTCTGTTATTGGACCCTGCTGATGGAATGGTTGACAAAGCTGTTGCTCTTTTGGCAAACCTGTCAACAATTGTGGAGGGCCGATTAGAAATTGCAAGGGAAGGGGGCATTCCCTTACTTGTTGAAATTGTTGAATCAGGTTCTCAGAGGGGAAAGGAAAATGCTGCTTCCATCCTCTTGCAACTATGTTTTCATAGTCGAAAGTTTTGTACCCTGATTCTCCAAGAAGGCGCTGTACCTCCCCTGGTTGCATTATCTCAGTCTGGTACTCCAAGAGCAAAGGAAAAGGCACAACAGCTTCTCAGTCATTTTCGGAATCAGCGTGAAGGAGCCATGGGGAAGGGGAAATCATGA 2394 0.3885 MHIGQTNTTSVKCLVNGISRFIHLVSCQTVKPMPLQKNCNNMVGVLKRLKPMLNDIVDNKITLDENLYRECEELDMWVNETREFIEKWGPKMSKIHSVLQSGELLIKIQNSSLKICHMIVRSLKSPASVSILANLQHYIQELQCLEKDPAMVYIEEALRNQRDNIQPFYDHLKEIIGLLKFTSNEELLKESIAVEMERSNAEVNKTKGDLDEINQIVNLVCNLRDYVMKIEQSEVKSGVLIPPYFRCPLSLEIMLDPVIVASGQTYERQSIQKWLDHGLTVCPNTHQRLFHTNLIPNYTVKAMIANWCEENNVKLPSNSKHSNSAHISSPSDHLLHQELDCVCSFESSDSSISNLDQTGTAFEKQKDDNSFRSNKKSNGCQNEETEKSEQQSPAPSCSNSRSESFSSSISSTDYVLPVSKEVSSISNKHQNVELSGEITNGCPTSPAYKEFGIYPWSSGKQFDSPGSKIGRMENENKYNENNNNTIITSHLKVDSHPISNLGSDELITASHVNELIEDLQCQLIETQTAAAEKLRLYTKHNMENRIIVGQCGAIMPLLSLLYSDMKITQEHAVTALLNLSIYDNNKALIMEAGAIESFIHVLQTGNDGAKENSAAALFSLSVMDKNKAKIGRSGAVKALVDLLASGTLRGKKDAATALFNLSIFHENKARIVQAGAVKFLVLLLDPADGMVDKAVALLANLSTIVEGRLEIAREGGIPLLVEIVESGSQRGKENAASILLQLCFHSRKFCTLILQEGAVPPLVALSQSGTPRAKEKAQQLLSHFRNQREGAMGKGKS 797
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02214 797 Pfam U-box domain 241 312 IPR003613 GO:0004842|GO:0016567
Cca03g02214 797 PANTHER U-BOX DOMAIN-CONTAINING PROTEIN 3 11 792 - -
Cca03g02214 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 634 676 IPR000225 GO:0005515
Cca03g02214 797 Gene3D - 495 791 IPR011989 -
Cca03g02214 797 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 241 315 IPR013083 -
Cca03g02214 797 MobiDBLite consensus disorder prediction 384 407 - -
Cca03g02214 797 MobiDBLite consensus disorder prediction 362 383 - -
Cca03g02214 797 PANTHER U BOX DOMAIN-CONTAINING 11 792 - -
Cca03g02214 797 ProSiteProfiles U-box domain profile. 240 314 IPR003613 GO:0004842|GO:0016567
Cca03g02214 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 675 716 IPR000225 GO:0005515
Cca03g02214 797 SUPERFAMILY ARM repeat 505 784 IPR016024 -
Cca03g02214 797 MobiDBLite consensus disorder prediction 362 407 - -
Cca03g02214 797 Pfam Armadillo/beta-catenin-like repeat 543 580 IPR000225 GO:0005515
Cca03g02214 797 Pfam Armadillo/beta-catenin-like repeat 624 662 IPR000225 GO:0005515
Cca03g02214 797 SMART arm_5 704 744 IPR000225 GO:0005515
Cca03g02214 797 SMART arm_5 541 581 IPR000225 GO:0005515
Cca03g02214 797 SMART arm_5 623 663 IPR000225 GO:0005515
Cca03g02214 797 SMART arm_5 582 622 IPR000225 GO:0005515
Cca03g02214 797 SMART arm_5 664 703 IPR000225 GO:0005515
Cca03g02214 797 SMART Ubox_2 244 307 IPR003613 GO:0004842|GO:0016567
Cca03g02214 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 552 594 IPR000225 GO:0005515
Cca03g02214 797 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 593 635 IPR000225 GO:0005515
Cca03g02214 797 SUPERFAMILY RING/U-box 241 315 - -
Cca03g02214 797 CDD RING-Ubox_PUB 245 287 IPR045210 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02214 Cca-Chr3 42889197 42895210 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02214 11 797 U-box Gene Family AT3G54790 50.692 0.0 680
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02214 - - gmx:100804684 1296.95
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02214 03 42889197 42895210 Cca03g02214 03 42889197 42895210 ECH