Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02212 ATGGCTCCACCGTCATTCTCAACATGGTGTCGCTACTTGGCCAACAAGTTAGAATACACCCTTCTTAGCTTGAAGAGCTATGAAGGAGGACAGCAAAGCGACTTCATTTATAAGACCATGATGCTGAGAAAGTTGACTTACGTGTACCGGAATGAAGGGGACCAGGTGGCTCCTACTAGTATTGGAAAAGCAGAAACTCTTCTTGTCCGGAAGTTACCAATTGCTGCTCCAAAGAATGTTTCTGTAGGAGATTTAGTGGTCTTGAAAAACCCTGAGAAGAAAGATAACTATCTAGTCAGGCGATTAACTGCTATTGAAGGTTATGAGATGGTTTCGACTAATGACAAGGATGAAACCTTTATTCTAGAGAAGGATCAATGTTGGGTAGAAGCTGATAATAAAAGTTTAAAACCCAAGGAAGCAAGGGACAGTCGATCATTTGGTCCAGTTGACATGACAGATATTGTAGGCAGAGTCATTTATCGCCTGCGAACTTGTGTAGATCATGGCTGTGTACGAAACAGTCATTCCAGCATGCTAAAGGATTGGCCCGTGTTGGCAGTGGAACTTGATGTTGAGGAGATGTCAAAGAATCATAAGGCCTAA 606 0.4257 MAPPSFSTWCRYLANKLEYTLLSLKSYEGGQQSDFIYKTMMLRKLTYVYRNEGDQVAPTSIGKAETLLVRKLPIAAPKNVSVGDLVVLKNPEKKDNYLVRRLTAIEGYEMVSTNDKDETFILEKDQCWVEADNKSLKPKEARDSRSFGPVDMTDIVGRVIYRLRTCVDHGCVRNSHSSMLKDWPVLAVELDVEEMSKNHKA 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02212 201 PANTHER OSJNBA0068L06.9 PROTEIN 5 201 - -
Cca03g02212 201 CDD S26_SPase_I 67 159 IPR019533 GO:0004252|GO:0006465
Cca03g02212 201 SUPERFAMILY LexA/Signal peptidase 65 164 IPR036286 -
Cca03g02212 201 Gene3D Umud Fragment, subunit A 5 173 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02212 Cca-Chr3 42875902 42881120 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02212 81 170 MADS-box Gene Family AT1G29960 32.292 4.01e-09 51.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02212 - - csin:114275160 259.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02212 03 42875902 42881120 Cca03g02212 03 42875902 42881120 ECH