Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02206 ATGGGTAGAGCTCCATGCTGCGAGAAAATGGGGTTGAAGAGAGGGCCATGGACTCCAGAAGAAGATCAAATTCTCATCAATTATATCAACACTTATGGCCATGCTAATTGGCGTGCACTGCCAAAACTAGCTGGGCTGCTAAGGTGTGGAAAGAGTTGTAGACTAAGGTGGATAAATTATCTGAGACCAGACATCAAACGGGGCAACTTTACCAGAGAAGAAGAGGATGCTATAATCAGCTTGCATGAAATGTTGGGAAACAGATGGTCAGCTATTGCAGCCAGGTTGCCAGGTAGAACAGACAATGAGATAAAAAACGTGTGGCACACCCACTTGAAGAAGAGGCTGCCACAAAATTACCAAGAGTGCCACGACCCTAAACGAAGCAAAAAACAACCCAAGTTGGACGTTGTTGACGCCTCAAAATCCAACCAAGACGCCAAACTAGAACAAGAACAAGACCCCTTGAATTCTCCCATTCATGCATCATCAACCAAAGAAGAGGACATGCCACTGTCTCCTCCACAATGTTCAAGCGACATGTCTTCCCTCACCACTAGTGACAACAATAGTAGCATTAATAATCATGACATGTCCTTAAATGTTAATGATATTGAAACGCCGGAGAATAATCTTGCATTAGATGAGGATTTCTGGTCCGAAGTGTTGTCTTCCGATAATTCAGGTGAGACAAACGGGTTTCCAACCATTGATGTTGACTTTGATCCGTTTCGACCAATGTCTCATGTCACCGAAGATGGGGTTCTTATAGATAGTTCGTCAAGTATCTGCGATGGCATGGAGTTTTGGTGCAATATTTACACGAGAGCTGAGGAATTCACTCAGTTGCTGGAATTGTGA 861 0.4379 MGRAPCCEKMGLKRGPWTPEEDQILINYINTYGHANWRALPKLAGLLRCGKSCRLRWINYLRPDIKRGNFTREEEDAIISLHEMLGNRWSAIAARLPGRTDNEIKNVWHTHLKKRLPQNYQECHDPKRSKKQPKLDVVDASKSNQDAKLEQEQDPLNSPIHASSTKEEDMPLSPPQCSSDMSSLTTSDNNSSINNHDMSLNVNDIETPENNLALDEDFWSEVLSSDNSGETNGFPTIDVDFDPFRPMSHVTEDGVLIDSSSSICDGMEFWCNIYTRAEEFTQLLEL 286
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02206 286 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Cca03g02206 286 CDD SANT 69 112 IPR001005 -
Cca03g02206 286 PANTHER TRANSCRIPTION FACTOR MYB8-RELATED-RELATED 1 238 - -
Cca03g02206 286 SUPERFAMILY Homeodomain-like 10 108 IPR009057 -
Cca03g02206 286 Gene3D - 69 142 - -
Cca03g02206 286 CDD SANT 16 61 IPR001005 -
Cca03g02206 286 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Cca03g02206 286 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Cca03g02206 286 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Cca03g02206 286 SMART sant 13 63 IPR001005 -
Cca03g02206 286 SMART sant 66 114 IPR001005 -
Cca03g02206 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Cca03g02206 286 Gene3D - 11 67 - -
Cca03g02206 286 MobiDBLite consensus disorder prediction 118 149 - -
Cca03g02206 286 MobiDBLite consensus disorder prediction 118 196 - -
Cca03g02206 286 MobiDBLite consensus disorder prediction 150 196 - -
Cca03g02206 286 PANTHER MYB-RELATED PROTEIN ZM1 1 238 - -
Cca03g02206 286 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02206 Cca-Chr3 42843285 42845452 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02206 1 286 MYB Transcription Factor Family AT2G31180 48.829 1.51e-83 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Cca03g02206 Myb_DNA-binding 1.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02206 K09422 - gmx:100775603 483.796
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02206 03 42843285 42845452 Cca03g02206 03 42843285 42845452 ECH
Cca03g02206 03 42843285 42845452 Cca02g00075 02 1330541 1333470 PCT
Cca02g01012 02 26696546 26700208 Cca03g02206 03 42843285 42845452 PCT