Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02203 ATGGCGAAGGAGCAAATTCAGGTGCTAAATGCACTTGATGTGGCAAAAACACAATGGTACCATTTCACTGCAATCATCATTGCTGGAATGGGCTTCTTCACTGATGCATACGATCTATTCTGCATATCCCTTGTTACAAAGTTACTTGGCCGCATATACTACCATGTTGATGGCGCAGCAAAGCCCGGTATATTGCCTCCCAATGTTTCAGCTGCTGTAAATGGTGTGGCTTTCTGTGGAACACTTTCTGGCCAGCTTTTCTTTGGCTGGCTTGGTGATAAAATGGGAAGGAAAAAAGTTTATGGCATGACATTGATGCTGATGGTAATATGCTCGATTGGTTCAGGCCTTTCATTCGGACATAGTGCAAAATCTGTGATGGCAACTCTTTGCTTCTTCAGGTTCTGGCTTGGGTTTGGGATTGGTGGAGATTATCCACTTTCTGCCACTATAATGTCTGAGTATTCCAATAAGAAGACTCGTGGTGCCTTCATTGCTGCAGTCTTTGCCATGCAGGGTTTTGGAATTTTGGCAGGTGGCATGTTTGCAATCATAATTTCAGTTGCATTCAAGAACAGGTTTGAGGCTCCACCGTATGAGGTTGATCCAGTTGGCTCAACTGTTGCACAAGCAGACTACATTTGGAGGATAATTGTGATGGTGGGAGCACTTCCAGCTGCATTGACTTACTACTGGCGGATGAAGATGCCCGAAACCGCCCGTTATACCGCCCTAGTCGCCAAGAACATGGAGCAGGCAGCAACAGATATGTCTAAGGTTCTGCAGGTTGAGATTCAAGCTGAACCAAAGAAAGAAGTGACAGAAACGGCCAAGTCATATGGCTTGTTCTCAAAGGAGTTCCTCAGTCGCCATGGACTGCACCTACTCGGTACAGCAAGCACATGGTTCTTGCTTGATATTGCATTTTATAGCCAAAACCTTTTCCAGAAGGATATCTTCAGTGCAATTGGTTGGATACCTCCTGCAAAAACCATGAATGCCATTGAGGAGGTTTACAGAATTGCAAGGGCTCAAACACTCATTGCTCTATGCAGTACTGTCCCAGGCTACTGGTTCACAGTGGCTTTAATTGACAAGATAGGAAGATTTGCTATCCAATTGATGGGGTTCTTCTTCATGACTGTCTTCATGTTTGCTCTTGCCATTCCTTATGACCACTGGACTCATAAGGATAACCGGATAGGATTTGTGGTGATGTATTCATTGACCTTCTTCTTTGCAAATTTTGGGCCTAATGCCACCACATTTGTCGTGCCGGCAGAGATTTTCCCTGCCAGATTCCGATCTACCTGCCATGGAATTTCATCAGCATCCGGGAAGCTTGGGGCTATAGTTGGCGCATTTGGGTTCTTGTATTTGGCACAAAACAAGGACAAGAGCAAAGCAGATGCAGGGTACCCTGCAGGTATTGGTGTGAAGAATGCACTTATTGTCTTAGGTGTGGTTAACATTCTAGGCTTCTTCTTTACTTTCCTGGTGCCTGAGGCAAAGGGAAGATCATTGGAGGAGATGTCAGGTGAAAATGATGAGGAAGTTGGAACCGCGGAAGAGTCAGAGCAGTCACGTTCTCACAACAACAGGACGGTTCCATATGTTTAG 1620 0.4525 MAKEQIQVLNALDVAKTQWYHFTAIIIAGMGFFTDAYDLFCISLVTKLLGRIYYHVDGAAKPGILPPNVSAAVNGVAFCGTLSGQLFFGWLGDKMGRKKVYGMTLMLMVICSIGSGLSFGHSAKSVMATLCFFRFWLGFGIGGDYPLSATIMSEYSNKKTRGAFIAAVFAMQGFGILAGGMFAIIISVAFKNRFEAPPYEVDPVGSTVAQADYIWRIIVMVGALPAALTYYWRMKMPETARYTALVAKNMEQAATDMSKVLQVEIQAEPKKEVTETAKSYGLFSKEFLSRHGLHLLGTASTWFLLDIAFYSQNLFQKDIFSAIGWIPPAKTMNAIEEVYRIARAQTLIALCSTVPGYWFTVALIDKIGRFAIQLMGFFFMTVFMFALAIPYDHWTHKDNRIGFVVMYSLTFFFANFGPNATTFVVPAEIFPARFRSTCHGISSASGKLGAIVGAFGFLYLAQNKDKSKADAGYPAGIGVKNALIVLGVVNILGFFFTFLVPEAKGRSLEEMSGENDEEVGTAEESEQSRSHNNRTVPYV 539
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02203 539 Pfam Sugar (and other) transporter 26 512 IPR005828 GO:0016021|GO:0022857|GO:0055085
Cca03g02203 539 TIGRFAM 2A0109: phosphate:H+ symporter 11 514 IPR004738 GO:0005315|GO:0006817|GO:0016021
Cca03g02203 539 MobiDBLite consensus disorder prediction 509 539 - -
Cca03g02203 539 PANTHER INORGANIC PHOSPHATE TRANSPORTER 1-7-RELATED 1 523 - -
Cca03g02203 539 CDD MFS_PhT 25 504 - -
Cca03g02203 539 PANTHER SOLUTE CARRIER FAMILY 22 MEMBER 1 523 - -
Cca03g02203 539 Gene3D MFS general substrate transporter like domains 20 529 IPR036259 -
Cca03g02203 539 ProSiteProfiles Major facilitator superfamily (MFS) profile. 24 505 IPR020846 GO:0022857
Cca03g02203 539 SUPERFAMILY MFS general substrate transporter 12 512 IPR036259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02203 Cca-Chr3 42811925 42814458 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02203 1 513 Inorganic Solute Cotransporters AT2G38940 83.915 0.0 911
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02203 K08176 - gmx:100819445 1032.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02203 03 42811925 42814458 Cca03g02203 03 42811925 42814458 ECH
Cca03g02203 03 42811925 42814458 Cca02g00076 02 1400212 1403880 PCT
Cca02g01016 02 26766345 26770668 Cca03g02203 03 42811925 42814458 PCT