Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02202 ATGGATTTAGAGTTGGATTCCACTTTCTTCCTAAACCAGAACCCTAACTTGTTCTCCTCTGTTTCGGGGGACCCATTCTCCTGGGACTACCACTTCGCTTTGGACGACATCTTCAACTCCTCTTCTCGGAGCAGCGTGGAGTCGAATGAAGTCTCGTCTgacgagaaggcgaaagaaggagaggcggcgaaggggaggaggatgtacagaggagtgaggaagaggCCGTGGGGGAAGTTCGCCGCAGAAATAAGGGACTCCACGCGGAACGGCGTGAGAGTGTGGATTGGAACGTTCGAGACGGCGGAGGCGGCGGCGCTGGCGTACGACCAGGCGGCGCTTTCGACGAGGGGGTCGATGGCGGTGCTGAATTTCCCGGAGGAAGTGGTGAGGGAGTCGCTGAAAGACAGTAAGCCCTTGGAAGAGGGTTCCTCCCCTGTGTTGGCGCTGAAGCGGAAACACACTATGAGGAGAAAGTGGAGTTGTaagaagaagagtaagagcaagagcacgagcacgagcacgagcgagcaaTTAGGGCAGAATGTGCTGGTGTTGGAGGATTTGGGTGCTGACTACTTAGAACAGCTTCTCACTTTGACTTCCTCCTAG 612 0.4477 MDLELDSTFFLNQNPNLFSSVSGDPFSWDYHFALDDIFNSSSRSSVESNEVSSDEKAKEGEAAKGRRMYRGVRKRPWGKFAAEIRDSTRNGVRVWIGTFETAEAAALAYDQAALSTRGSMAVLNFPEEVVRESLKDSKPLEEGSSPVLALKRKHTMRRKWSCKKKSKSKSTSTSTSEQLGQNVLVLEDLGADYLEQLLTLTSS 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02202 203 MobiDBLite consensus disorder prediction 153 178 - -
Cca03g02202 203 MobiDBLite consensus disorder prediction 49 67 - -
Cca03g02202 203 PANTHER DNA-BINDING DOMAIN 46 200 IPR044808 GO:0003700|GO:0009873
Cca03g02202 203 SMART rav1_2 68 132 IPR001471 GO:0003700|GO:0006355
Cca03g02202 203 Pfam AP2 domain 69 118 IPR001471 GO:0003700|GO:0006355
Cca03g02202 203 ProSiteProfiles AP2/ERF domain profile. 68 126 IPR001471 GO:0003700|GO:0006355
Cca03g02202 203 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 46 200 - -
Cca03g02202 203 Gene3D AP2/ERF domain 68 128 IPR036955 GO:0003700|GO:0006355
Cca03g02202 203 SUPERFAMILY DNA-binding domain 68 127 IPR016177 GO:0003677
Cca03g02202 203 PRINTS Ethylene responsive element binding protein signature 69 80 IPR001471 GO:0003700|GO:0006355
Cca03g02202 203 PRINTS Ethylene responsive element binding protein signature 92 108 IPR001471 GO:0003700|GO:0006355
Cca03g02202 203 CDD AP2 69 127 IPR001471 GO:0003700|GO:0006355
Cca03g02202 203 MobiDBLite consensus disorder prediction 45 67 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02202 Cca-Chr3 42778313 42779011 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02202 37 198 AP2-EREBP Transcription Factor Family AT3G23240 55.828 1.53e-52 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g02202 AP2 1.2e-12 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02202 K14516 - gmx:100779524 236.498
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02202 03 42778313 42779011 Cca03g02202 03 42778313 42779011 ECH
Cca03g02202 03 42778313 42779011 Cca02g01017 02 26817533 26818576 PCT