Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02201 ATGGAGGGTGGGAGAAGAGTTGGAGAGGTTCGGTACAGAGGGATTCGTAAGAGGCCATGGGGTAAGTTTGCAGCAGAGATTCGTGACCCTACAAAAAAAGGTGCTCGCATATGGCTCGGAACCTTTGACACTGCTGAACAAGCCGCACGTGCCTACGATGTGGCTGCTTTTCGTTTTCGTGGTCACAGGGCCATACTCAACTTCCCTAATGATCATGGACACACCACTACTCCTAGTCCAAACACTTCATTGcctcttcctcctcctccttcttctTACCCTAATTCCTACTCTGGTGAGGGTTCGTCAACACAACAACAACAGCAGCAGCAAAatgatgatgatgatgatgacgaCACTTTTGAAGTGGAATACTTTGACAATAAGTTGTTGGAAGAACTTCTTCAGGAGCCTGATGGTACAGGAAACTCAAAAGCACACTAG 444 0.4257 MEGGRRVGEVRYRGIRKRPWGKFAAEIRDPTKKGARIWLGTFDTAEQAARAYDVAAFRFRGHRAILNFPNDHGHTTTPSPNTSLPLPPPPSSYPNSYSGEGSSTQQQQQQQNDDDDDDDTFEVEYFDNKLLEELLQEPDGTGNSKAH 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02201 147 Pfam AP2 domain 11 62 IPR001471 GO:0003700|GO:0006355
Cca03g02201 147 ProSiteProfiles AP2/ERF domain profile. 11 69 IPR001471 GO:0003700|GO:0006355
Cca03g02201 147 MobiDBLite consensus disorder prediction 66 147 - -
Cca03g02201 147 Gene3D AP2/ERF domain 10 70 IPR036955 GO:0003700|GO:0006355
Cca03g02201 147 SUPERFAMILY DNA-binding domain 11 70 IPR016177 GO:0003677
Cca03g02201 147 PRINTS Ethylene responsive element binding protein signature 12 23 IPR001471 GO:0003700|GO:0006355
Cca03g02201 147 PRINTS Ethylene responsive element binding protein signature 35 51 IPR001471 GO:0003700|GO:0006355
Cca03g02201 147 SMART rav1_2 11 75 IPR001471 GO:0003700|GO:0006355
Cca03g02201 147 MobiDBLite consensus disorder prediction 95 110 - -
Cca03g02201 147 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF105 8 119 - -
Cca03g02201 147 CDD AP2 11 71 IPR001471 GO:0003700|GO:0006355
Cca03g02201 147 PANTHER DNA-BINDING DOMAIN 8 119 IPR044808 GO:0003700|GO:0009873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02201 Cca-Chr3 42761778 42762499 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02201 9 135 AP2-EREBP Transcription Factor Family AT3G23230 54.331 3.60e-37 122
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g02201 AP2 2.2e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02201 - - vun:114173094 166.007
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02201 03 42761778 42762499 Cca02g01018 02 26852639 26853382 PCT