Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02200 ATGACTTCTCCTTTGTTTCAACATTCAGATTGGGGCACGTTGAAGGAGCCTTCGGAGATTTTGTTTGAATCATTTTCAAGCAAAGGTATTGATCATGATTATGACCCTTTTCATGACTATCTTTCCTTTGATATGATTGACTACTCAAGGGATCCACGGGAACCATGTGAAGTGATTGAAGTGCAAACTAAGAAGTCTTATGTTGGGGTGAGGAAAAGACCATGGGGAAAATTTGCAGCAGAAATCAGAGACACAACGAGGAAAGGTGTGAGGGTGTGGCTTGGAACGTTTGATAGTGAAGAGGAAGCTGCTTTGGCTTATGATCAAGCTGCATTTTCCATGAGAGGCTCCAGTGCAGTGCTGAATTTTCCTGTCAAAAGGGTCAAAGAGTCTTTACAAGAGATGAATTATTCAGGTTGCAGGAAAGGGTGTTCTCCTGCATTAGAACTCAAAGCGAGGCACAATATGCGACGAAAATTGTCATCAAAGGCTAAGAAAAGTAAAGGGAAACAAGAATTGGAGGAATCAAGTGTTGTGGTGCTAGAGGACTTGGGAGCTGAATACTTAGAGGCACTTCTTAGCATATCGGATCAAAGTGCAAGCTCTTGA 609 0.422 MTSPLFQHSDWGTLKEPSEILFESFSSKGIDHDYDPFHDYLSFDMIDYSRDPREPCEVIEVQTKKSYVGVRKRPWGKFAAEIRDTTRKGVRVWLGTFDSEEEAALAYDQAAFSMRGSSAVLNFPVKRVKESLQEMNYSGCRKGCSPALELKARHNMRRKLSSKAKKSKGKQELEESSVVVLEDLGAEYLEALLSISDQSASS 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02200 202 CDD AP2 65 125 IPR001471 GO:0003700|GO:0006355
Cca03g02200 202 Pfam AP2 domain 66 116 IPR001471 GO:0003700|GO:0006355
Cca03g02200 202 Gene3D AP2/ERF domain 65 126 IPR036955 GO:0003700|GO:0006355
Cca03g02200 202 ProSiteProfiles AP2/ERF domain profile. 66 124 IPR001471 GO:0003700|GO:0006355
Cca03g02200 202 SUPERFAMILY DNA-binding domain 66 125 IPR016177 GO:0003677
Cca03g02200 202 SMART rav1_2 66 130 IPR001471 GO:0003700|GO:0006355
Cca03g02200 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 1B 59 195 - -
Cca03g02200 202 PANTHER DNA-BINDING DOMAIN 59 195 IPR044808 GO:0003700|GO:0009873
Cca03g02200 202 PRINTS Ethylene responsive element binding protein signature 67 78 IPR001471 GO:0003700|GO:0006355
Cca03g02200 202 PRINTS Ethylene responsive element binding protein signature 106 126 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02200 Cca-Chr3 42730758 42731399 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02200 62 201 AP2-EREBP Transcription Factor Family AT3G23240 59.155 1.03e-54 172
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca03g02200 AP2 5e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02200 K14516 - gmx:100800600 298.13
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02200 03 42730758 42731399 Cca03g03083 03 52307826 52308362 ECH
Cca03g02200 03 42730758 42731399 Cca02g01608 02 34849302 34849790 ECH
Cca03g02200 03 42730758 42731399 Cca03g02200 03 42730758 42731399 ECH
Cca03g02200 03 42730758 42731399 Cca02g01023 02 26954291 26954926 PCT