Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g02199 | ATGGATTTTAATCCTTCTATATTTTCGTACCAAAGTGTAGAATCCAATTTCATTTCATGGGAAGAGTTGTTTTCGTTCAACAACCCTCCCTTGAATGTAAGGGGTGGAGGAATAATGAAGGTACAAGAGCACAACTTGGATATTACATGTGATGGGTCAAATCCACAACCACTATCAATGGCCTCAACAACAACATGTAAGCGAGAGAAGAGACCCTATAGAGGGGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATAAGGGACCCCACTAGAAATGGTGTTAGGGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCAGCATTCTTAACAAGGGGTGTTCTGGCTACCCTTAACTTTTCAGCACAAGTGGCCATGGAGTCTCTTCAAGAGATGGGTTTTAAGGCTATGAAAAGTGATCGCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGTTAGTAGGAGTGGTGATAAAAAGGTTAAAAGGGCTTGCAAAAATGGGAAGTTTGACACTACTCAGAATGTGTTGGTGTTGGAGGATTTGGGTCCGGAATATCTAGAGCAACTTTTGAGCTTCACTTCACCCGGTTCTTGGTACTGA | 648 | 0.4259 | MDFNPSIFSYQSVESNFISWEELFSFNNPPLNVRGGGIMKVQEHNLDITCDGSNPQPLSMASTTTCKREKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQVAMESLQEMGFKAMKSDRSPLLELKRMHVMRTKSRVSRSGDKKVKRACKNGKFDTTQNVLVLEDLGPEYLEQLLSFTSPGSWY | 215 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g02199 | 215 | PANTHER | AP2 DOMAIN CLASS TRANSCRIPTION FACTOR | 63 | 209 | - | - | |
Cca03g02199 | 215 | Pfam | AP2 domain | 73 | 118 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | CDD | AP2 | 73 | 129 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | PRINTS | Ethylene responsive element binding protein signature | 73 | 84 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | PRINTS | Ethylene responsive element binding protein signature | 96 | 112 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | Gene3D | AP2/ERF domain | 72 | 132 | IPR036955 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | ProSiteProfiles | AP2/ERF domain profile. | 72 | 130 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | SMART | rav1_2 | 72 | 136 | IPR001471 | GO:0003700|GO:0006355 | |
Cca03g02199 | 215 | PANTHER | DNA-BINDING DOMAIN | 63 | 209 | IPR044808 | GO:0003700|GO:0009873 | |
Cca03g02199 | 215 | SUPERFAMILY | DNA-binding domain | 73 | 131 | IPR016177 | GO:0003677 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g02199 | Cca-Chr3 | 42723042 | 42723908 | Tandem |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g02199 | 43 | 214 | AP2-EREBP Transcription Factor Family | AT3G23240 | 51.445 | 3.94e-48 | 155 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | AP2 or ERF-ERF | Cca03g02199 | AP2 | 5.9e-14 | CL0081 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g02199 | K14516 | - | gmx:100818907 | 293.508 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g02199 | 03 | 42723042 | 42723908 | Cca03g02199 | 03 | 42723042 | 42723908 | ECH | |
Cca03g02199 | 03 | 42723042 | 42723908 | Cca02g00083 | 02 | 1518332 | 1519178 | PCT | |
Cca02g01024 | 02 | 26978087 | 26978695 | Cca03g02199 | 03 | 42723042 | 42723908 | PCT |