Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02199 ATGGATTTTAATCCTTCTATATTTTCGTACCAAAGTGTAGAATCCAATTTCATTTCATGGGAAGAGTTGTTTTCGTTCAACAACCCTCCCTTGAATGTAAGGGGTGGAGGAATAATGAAGGTACAAGAGCACAACTTGGATATTACATGTGATGGGTCAAATCCACAACCACTATCAATGGCCTCAACAACAACATGTAAGCGAGAGAAGAGACCCTATAGAGGGGTAAGAAGAAGGCCATGGGGAAAATTCGCAGCAGAAATAAGGGACCCCACTAGAAATGGTGTTAGGGTATGGATTGGAACATTTGACACTGCTGAAGAAGCTGCTTTGGCTTATGATCAAGCAGCATTCTTAACAAGGGGTGTTCTGGCTACCCTTAACTTTTCAGCACAAGTGGCCATGGAGTCTCTTCAAGAGATGGGTTTTAAGGCTATGAAAAGTGATCGCTCACCCTTGTTGGAACTCAAAAGGATGCACGTGATGAGAACAAAATCTAGGGTTAGTAGGAGTGGTGATAAAAAGGTTAAAAGGGCTTGCAAAAATGGGAAGTTTGACACTACTCAGAATGTGTTGGTGTTGGAGGATTTGGGTCCGGAATATCTAGAGCAACTTTTGAGCTTCACTTCACCCGGTTCTTGGTACTGA 648 0.4259 MDFNPSIFSYQSVESNFISWEELFSFNNPPLNVRGGGIMKVQEHNLDITCDGSNPQPLSMASTTTCKREKRPYRGVRRRPWGKFAAEIRDPTRNGVRVWIGTFDTAEEAALAYDQAAFLTRGVLATLNFSAQVAMESLQEMGFKAMKSDRSPLLELKRMHVMRTKSRVSRSGDKKVKRACKNGKFDTTQNVLVLEDLGPEYLEQLLSFTSPGSWY 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02199 215 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 63 209 - -
Cca03g02199 215 Pfam AP2 domain 73 118 IPR001471 GO:0003700|GO:0006355
Cca03g02199 215 CDD AP2 73 129 IPR001471 GO:0003700|GO:0006355
Cca03g02199 215 PRINTS Ethylene responsive element binding protein signature 73 84 IPR001471 GO:0003700|GO:0006355
Cca03g02199 215 PRINTS Ethylene responsive element binding protein signature 96 112 IPR001471 GO:0003700|GO:0006355
Cca03g02199 215 Gene3D AP2/ERF domain 72 132 IPR036955 GO:0003700|GO:0006355
Cca03g02199 215 ProSiteProfiles AP2/ERF domain profile. 72 130 IPR001471 GO:0003700|GO:0006355
Cca03g02199 215 SMART rav1_2 72 136 IPR001471 GO:0003700|GO:0006355
Cca03g02199 215 PANTHER DNA-BINDING DOMAIN 63 209 IPR044808 GO:0003700|GO:0009873
Cca03g02199 215 SUPERFAMILY DNA-binding domain 73 131 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02199 Cca-Chr3 42723042 42723908 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02199 43 214 AP2-EREBP Transcription Factor Family AT3G23240 51.445 3.94e-48 155
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2 or ERF-ERF Cca03g02199 AP2 5.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02199 K14516 - gmx:100818907 293.508
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02199 03 42723042 42723908 Cca03g02199 03 42723042 42723908 ECH
Cca03g02199 03 42723042 42723908 Cca02g00083 02 1518332 1519178 PCT
Cca02g01024 02 26978087 26978695 Cca03g02199 03 42723042 42723908 PCT