Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02198 ATGGAGGACTTAAAGGAAATGGTAAAGGAAGAAGAACCAAAGCAAATAAAGTATAGAGGAGTACGAAGGAGGCCATGGGGAAAGTTTGCAGCAGAGATTAGAGACTCAAGTAGACATGGAAATCGTGTGTGGCTTGGGACATTTAACACTGCTGAGGAGGCTGCAAGAGCTTATGATCGTGCTGCCTTTGAGATGAGAGGTACTTTGGCCATTCTCAACTTCCCAAATGAACACCCTCCATGCAATGTGCCTTCTCTTGGCAAGTCCTCATCATCTAGAACTCAGCATCAAGTTGTAGTGTTTGAGTGTTTGGATGACAAATTGCTAGAGGAACTCCTTGATTGTGATGACAAAATCATCCATGAAAACTTTTGA 375 0.4293 MEDLKEMVKEEEPKQIKYRGVRRRPWGKFAAEIRDSSRHGNRVWLGTFNTAEEAARAYDRAAFEMRGTLAILNFPNEHPPCNVPSLGKSSSSRTQHQVVVFECLDDKLLEELLDCDDKIIHENF 124
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02198 124 CDD AP2 17 76 IPR001471 GO:0003700|GO:0006355
Cca03g02198 124 Pfam AP2 domain 17 67 IPR001471 GO:0003700|GO:0006355
Cca03g02198 124 Gene3D AP2/ERF domain 16 76 IPR036955 GO:0003700|GO:0006355
Cca03g02198 124 PANTHER DNA-BINDING DOMAIN 10 88 IPR044808 GO:0003700|GO:0009873
Cca03g02198 124 PRINTS Ethylene responsive element binding protein signature 18 29 IPR001471 GO:0003700|GO:0006355
Cca03g02198 124 PRINTS Ethylene responsive element binding protein signature 41 57 IPR001471 GO:0003700|GO:0006355
Cca03g02198 124 SMART rav1_2 17 81 IPR001471 GO:0003700|GO:0006355
Cca03g02198 124 PANTHER PATHOGENESIS-RELATED GENES TRANSCRIPTIONAL ACTIVATOR PTI5 10 88 - -
Cca03g02198 124 SUPERFAMILY DNA-binding domain 17 76 IPR016177 GO:0003677
Cca03g02198 124 ProSiteProfiles AP2/ERF domain profile. 17 75 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02198 Cca-Chr3 42709704 42710249 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02198 14 118 AP2-EREBP Transcription Factor Family AT3G23230 57.377 7.45e-42 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g02198 AP2 9.2e-17 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02198 - - gmx:100800069 179.874
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02198 03 42709704 42710249 Cca03g02198 03 42709704 42710249 ECH
Cca02g01026 02 27013862 27014527 Cca03g02198 03 42709704 42710249 PCT