Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02197 ATGGCACTGATCCACCACAACCCCTCTTACAAGCTTCTACATCAAGCTCCCTCACCCACATTAATCCATCACACACCACACTATGCTTCAGAttctgcttctgcttctgcttctgcttTACCCATCATTCTCCTCACCATCTTTTTCACTGCTATCACACTCATCACCTACTTAACTCTTGTCGCCAAATGCTGCTCAAACTGGCATCCATTCAGATGGATCTTAACCCTACGAGCTCCACAGCATGAGGTTCAAGACCCCTTCATTGCACTCTCTCCCATCATGTGGAACCATGGACTCGATGAATCTTCCATCAGAGAAATTCCAACATTTCAATTCACTAAAGGAGAGGTTGAGAACATTAATCAAAGTGTCTGTGGCTGTGTGGTTTGTTTGAATGAGTTTCAAGAACATGACATGCTAAAAGTTTTGCCAAAATGCAAACACGCCTTTCACTTGCATTGCATTGATGTTTGGCTTCAAACCAATGCTAAATGCCCTCTTTGTAGATCAACCATTGTTTCAGGCAACAAACACTGTCCACAGGATCATGTCATAGCAGCTCCTAGCTCTTCTCCTCAGGATTCTCAACTGCTCTCTTGCATGGACAGTAATGAAGATTTTGTGGTCATTGAACTTGGGGGAGAACATGGGACAACACTGCCTCGGATGCACCAAGAAAAAAGTGGCTCAAGGGAAAGAATAGGAGAGAGAAGAAGTCACTATACAAGAAAGTGTCACCATTCTTCCATCATGGGAGATGAGTGTATTGATGTTAGGAAGAAAGATGAGCAGTTTTCTGTTCAGCCTATTCGAAGATCTTTCTCCATGGATTCAGCAAATGATAGGCAAGTTTACTTGGATTTTCAATCCATAATACACCAGAATAATAGGTCTTAG 900 0.4133 MALIHHNPSYKLLHQAPSPTLIHHTPHYASDSASASASALPIILLTIFFTAITLITYLTLVAKCCSNWHPFRWILTLRAPQHEVQDPFIALSPIMWNHGLDESSIREIPTFQFTKGEVENINQSVCGCVVCLNEFQEHDMLKVLPKCKHAFHLHCIDVWLQTNAKCPLCRSTIVSGNKHCPQDHVIAAPSSSPQDSQLLSCMDSNEDFVVIELGGEHGTTLPRMHQEKSGSRERIGERRSHYTRKCHHSSIMGDECIDVRKKDEQFSVQPIRRSFSMDSANDRQVYLDFQSIIHQNNRS 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02197 299 ProSiteProfiles Zinc finger RING-type profile. 128 170 IPR001841 -
Cca03g02197 299 SUPERFAMILY RING/U-box 121 179 - -
Cca03g02197 299 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 9 298 - -
Cca03g02197 299 Pfam Ring finger domain 128 170 IPR001841 -
Cca03g02197 299 CDD RING-H2_EL5_like 128 170 - -
Cca03g02197 299 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 93 175 IPR013083 -
Cca03g02197 299 PANTHER RING-H2 FINGER PROTEIN ATL16 9 298 IPR044600 GO:0016567|GO:0016740
Cca03g02197 299 SMART ring_2 128 169 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02197 Cca-Chr3 42704323 42705222 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02197 33 298 C3H Transcription Factor Family AT1G04360 39.672 7.58e-59 191
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02197 K19041 - gmx:100809883 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02197 03 42704323 42705222 Cca03g02197 03 42704323 42705222 ECH
Cca03g02197 03 42704323 42705222 Cca02g00086 02 1611511 1613065 PCT
Cca02g01033 02 27111885 27112922 Cca03g02197 03 42704323 42705222 PCT