Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02194 ATGGGTACTCACTTGCACCAAGTGCTCAGAAGCCTATGTTTCAATACTCACTGGAACTACGCCATTTTTTGGAAGCTCAAACATCGTGCTCGAATGATCTTGACATGGGAGGACGCATACTATAACAATCCTGATGATTATGACTCTTCAGAAAATAAGCACTGCCAGAAGACCTTGGAACAGATTGGTTGTGGGAAATTTTCACACAGCGCACTAGGGTTAGCGGTGGCTAAGATGTCATATCATGCATATTCTTTAGGAGAAGGTATTGTTGGACAGGTAGCTGTTACTGGAAAACATAGGTGGATCTGTGCAGATAATCAAATTACAGGTTCTGGCTTGTCTTTTGAGTTTGCTGATGGGTGGCAGTCTCAGTTTTCTGCTGGAATCAGGACCGTTGCTGTTGTTGCTGTAGTCCCACTTGGTGTTGTTCAGCTCGGATCTCTAAATAAAGTGATTGAAGATATGGAGTTTGTAAATCATATCAGAAATCTTTTTTTGTCTACTCAAAATTACTCAATAGGTCAATGTCCTAATCAAATACAGGCTAGTTTGAAGAGTTCTTCATCTTCGCTGGATACCTTGAAGGAAAACATGTCTTCAGATATTGTGCCTACTTGCTTTTACAATACACAGAAATCCATGAAGAGTGAAACAGCAGATGTTTTAATGCCCCTTCAATGTTCTGGGAGGAACTATGCACCTCATTCTGGTTGTGAGAAAATGTCTGATAATGTGGCCAAGCAAGAGGGGCCTGGATTTTGCAGTGATGAAAGTTCCATTTTGCTTCAGTCGATATCCAATATGATGAACGTGGAACATCAGGAATTTGAAGAGATGAAACCTCTACATGGGAGGAAGTGTGAAGGAGGAAGTAGTGGCTGTGAAGATATGAAGTTGGAATCAGAAAAAAATATCTCTTCTCTTTTAAACGAATTTGTTACAGATAATGCTAGCTTCAATGATTTAATATATCCATCTGAAAAAGTCAGAGTTGATTCTGCATGTCTTCCTTCAGTTTTTCATGATACAGTTGTTTCTGAAAGTGATAAGTTGCATTGTGTGGATATTAACCAAAAAGGGAAGTTGAATTTCGTCCAACCTTCAGATGCAAACACCCAACAACTTACTGAAAAGTCAAAATTCCATACCGAGCCTTGTTACAAGGATAACTCATACTTTCAAACTGAACCTTGTTACAAGGATACGTCACACATGTTGAAGTTCCCTGCAGGCTGTGAGCTACATGAAGCACTTGGACCAGCTTTTTTGAAAGGGAATAAAAGTTTTGATTGGTCGACACATGTTAATCAAGATGTGAAAACAGTTGAAATGTCAGATGAGATTGCCACTAGCCAATTGACTTCTGAATCTCTTGCAGAGCATCTTTTGGAAGCAATGGTGGCCAACATTTGCCATAGTAATAACAATGTTAATAGTGAATTATCATTTTGTACATCTACATCAATGCAATCAGCAATGGACTCTGGAAAAAATCACGAAGCTTCTATTTACAATGTGCATGCTATTAATTCAGAAGGCTATTCAATAGATCAGCTCTCTCTTGTCAGAGAAGACAAACACCGTTCGTTGAGTTCATCATCAGGGATATGTGGTGCGATGTCCTCAAAAGGCGTTTCATCTACATTTCCTAGTTCAAATAGTGGACAGCTTGAAAGGTCTTCTGAACCATCTAAGAACAGCAAGAAGAGGGCCAGGCCTGGAGAAAGTTGTAGGCCTCGGCCAAGGGACAGGCAACTGATCCAAGATCGTATTAAGGAGTTGAGAGAGCTGGTGCCAAATGGAGCAAAGTGCAGTATTGATTCATTACTGGAGCGCGCAATAAAGCACATGCTCTTTCTCCAAAGCATAACTAAACATGCTGACAAGTTAACTGACTTTTCTGATACAAAGTCAAAGTTGCATCACATGGAACCAGAAATTCTTGGATCCTCTAGTTATGAGCAGGGCTCAAGCTGGGCAATGGAGGTAGGGGGTCATCTGAAAGTTCATTCAATATTAGTGGAGAATCTTAGCAAGAATGGCCAGATGCTTGTTGAGATGCTCTGTGAGGAGTGCAGCCATTTTCTTGAAATAGCAGAAGCCATCAGAAGTTTAGGCCTTACCATTTTGAAGGGTGCAACAAAAGCTCATGGTGAGAAGATATGGATATGCTTTGTCGTCGAGGGTCAAAACAACAGAAATGTACACAGATTGGATATCTTGTGGCCACTTGTTCAAATACTGCAGTCCAAGAGCACCGTGTATTCTCAATAA 2277 0.4049 MGTHLHQVLRSLCFNTHWNYAIFWKLKHRARMILTWEDAYYNNPDDYDSSENKHCQKTLEQIGCGKFSHSALGLAVAKMSYHAYSLGEGIVGQVAVTGKHRWICADNQITGSGLSFEFADGWQSQFSAGIRTVAVVAVVPLGVVQLGSLNKVIEDMEFVNHIRNLFLSTQNYSIGQCPNQIQASLKSSSSSLDTLKENMSSDIVPTCFYNTQKSMKSETADVLMPLQCSGRNYAPHSGCEKMSDNVAKQEGPGFCSDESSILLQSISNMMNVEHQEFEEMKPLHGRKCEGGSSGCEDMKLESEKNISSLLNEFVTDNASFNDLIYPSEKVRVDSACLPSVFHDTVVSESDKLHCVDINQKGKLNFVQPSDANTQQLTEKSKFHTEPCYKDNSYFQTEPCYKDTSHMLKFPAGCELHEALGPAFLKGNKSFDWSTHVNQDVKTVEMSDEIATSQLTSESLAEHLLEAMVANICHSNNNVNSELSFCTSTSMQSAMDSGKNHEASIYNVHAINSEGYSIDQLSLVREDKHRSLSSSSGICGAMSSKGVSSTFPSSNSGQLERSSEPSKNSKKRARPGESCRPRPRDRQLIQDRIKELRELVPNGAKCSIDSLLERAIKHMLFLQSITKHADKLTDFSDTKSKLHHMEPEILGSSSYEQGSSWAMEVGGHLKVHSILVENLSKNGQMLVEMLCEECSHFLEIAEAIRSLGLTILKGATKAHGEKIWICFVVEGQNNRNVHRLDILWPLVQILQSKSTVYSQ 758
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02194 758 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 5 166 IPR025610 -
Cca03g02194 758 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 572 621 IPR011598 GO:0046983
Cca03g02194 758 PANTHER TRANSCRIPTION FACTOR BHLH155-LIKE ISOFORM X1-RELATED 1 758 IPR043561 GO:0003700|GO:0006355
Cca03g02194 758 MobiDBLite consensus disorder prediction 542 562 - -
Cca03g02194 758 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 585 627 IPR036638 GO:0046983
Cca03g02194 758 MobiDBLite consensus disorder prediction 563 587 - -
Cca03g02194 758 MobiDBLite consensus disorder prediction 542 587 - -
Cca03g02194 758 PANTHER BHLH TRANSCRIPTION FACTOR-LIKE PROTEIN 1 758 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02194 Cca-Chr3 42665899 42672638 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02194 1 753 Basic Helix-Loop-Helix Transcription Factor Gene Family AT2G31280 40.253 1.62e-157 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02194 - - ccaj:109796613 1504.58
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02194 03 42665899 42672638 Cca03g02194 03 42665899 42672638 ECH
Cca03g02194 03 42665899 42672638 Cca02g01039 02 27186755 27194551 PCT