Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02192 ATGACTGGTTCTGGTTCTCCTTGTGGAGCCTGCAAATTCTTGAGAAGGAAATGTGTGAGAGGTTGTGTCTTTGCACCTTACTTTTGCCATGAACAAGGTGCCACACATTTTGCAGCGATTCATAAGGTCTTTGGTGCAAGCAATGTCTCAAAGCTCCTTGCTCACCTCCCTGTCAGTGACCGTTGTGAAGCTGCAGTCACAATCTCTTATGAAGCTCAAGCTAGACTTCAGGATCCAATTTATGGATGTGTTGCTCATATTTTTGCACTCCAACAACAGGTGGTGAATTTACAAGCACAACTAGCTTACCTCAGGGAACAAGCAGGTCAGATCTATCTCAATGCCTCTGCCCCTGAAAACCCTAATGAGAAAAACTTTGGAAAACCTACTACTTTCCCCCAAGATCTTCAAAGTTGGTTCCAGATGGAGAATTCCAACATGGCTTCACAATTTCTTCCTAACTTGTCCACCAGTTCCTCAATACAGTATTATGGGAATACTAATGCTCTCATGGACCCAAGCCCCACCGGAAACTATGAAAATTCAGGAACTATAGAAGAAAGCATCTCATTTTCCAGCTTTGAAGAGAGTTGTAACTCCATACCCTATGACATGCAAAGGCAGTGGGGTCTTTCATGA 639 0.4351 MTGSGSPCGACKFLRRKCVRGCVFAPYFCHEQGATHFAAIHKVFGASNVSKLLAHLPVSDRCEAAVTISYEAQARLQDPIYGCVAHIFALQQQVVNLQAQLAYLREQAGQIYLNASAPENPNEKNFGKPTTFPQDLQSWFQMENSNMASQFLPNLSTSSSIQYYGNTNALMDPSPTGNYENSGTIEESISFSSFEESCNSIPYDMQRQWGLS 212
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02192 212 Coils Coil 87 107 - -
Cca03g02192 212 ProSiteProfiles LOB domain profile. 6 108 IPR004883 -
Cca03g02192 212 PANTHER LOB DOMAIN-CONTAINING PROTEIN 17-RELATED 1 194 - -
Cca03g02192 212 Pfam Lateral organ boundaries (LOB) domain 7 104 IPR004883 -
Cca03g02192 212 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 194 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02192 Cca-Chr3 42639748 42640809 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02192 7 209 AS2 family AT3G58190 55.556 1.56e-71 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g02192 LOB 5.1e-36 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02192 K13945 K13944 gmx:100816960 384.415
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02192 03 42639748 42640809 Cca03g02192 03 42639748 42640809 ECH
Cca03g02192 03 42639748 42640809 Cca02g01044 02 27241723 27242730 PCT