Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02191 ATGGCTTCTGCAAGTGGAAATGGCACTTCTGGCTCTCCTTGCGGTGCATGCAAGTTCCTCAGGCGAAAGTGTGCAGCAGACTGCATCTTTGCACCTTACTTTTGCTCGGAACAAGGGCCTGCTAGATTTGCAGCCATACACAAGGTGTTTGGTGCTAGCAACGTTTCCAAGCTGCTTTTGCATATACCAGCTCATGATCGTTGTGAGGCCGTTGTCACAATCGCTTATGAGGCTCAGGCTCGTATCAGAGACCCTGTCTATGGCTGTGTGTCTCACATTTTCGCCTTACAGCAACAGGTGGCATGCTTGCAAGCACAGCTGATGCAAGTGAAGGCTCAGCTGGCTCAGAACCTGGTGGAGTCCAGGAACATAGAGAATCATCAGTGGCCAGGGAATAACACTAGTGTTGCAGGACAACCTATGAATCATCCTATTTGTCCCACTTACATGAACCCTATATCTCCTCAAAGCTCTCTTGAGTCAATTGACCACAGCAGCATCAATGACGGAATGGCCATGCAAGACATACAAAGCAGAGAGGATTTTCCAATCCAAGCTTCTAAGGAAAGATCATTTAACAACAATGACTTGGGGGAGCTTCAAGAACTAGCTCTCAGAATGATGAGGAACTAG 633 0.4771 MASASGNGTSGSPCGACKFLRRKCAADCIFAPYFCSEQGPARFAAIHKVFGASNVSKLLLHIPAHDRCEAVVTIAYEAQARIRDPVYGCVSHIFALQQQVACLQAQLMQVKAQLAQNLVESRNIENHQWPGNNTSVAGQPMNHPICPTYMNPISPQSSLESIDHSSINDGMAMQDIQSREDFPIQASKERSFNNNDLGELQELALRMMRN 210
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02191 210 Pfam Lateral organ boundaries (LOB) domain 13 111 IPR004883 -
Cca03g02191 210 ProSiteProfiles LOB domain profile. 12 114 IPR004883 -
Cca03g02191 210 Coils Coil 93 113 - -
Cca03g02191 210 PANTHER LOB DOMAIN CONTAINING PROTEIN 1 209 - -
Cca03g02191 210 PANTHER LOB DOMAIN-CONTAINING PROTEIN 16 1 209 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02191 Cca-Chr3 42621662 42623538 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02191 3 210 AS2 family AT2G42430 56.504 1.29e-78 234
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Cca03g02191 LOB 8e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02191 K13944 - gmx:100801508 389.808
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02191 03 42621662 42623538 Cca03g02191 03 42621662 42623538 ECH
Cca03g02191 03 42621662 42623538 Cca02g01045 02 27256520 27258374 PCT