Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02186 ATGGACCTAAACTACCCAGAAGAGAGCTACTCCAAGAGCTCCAGTGAAGAAACTGATGATCCATCATCTGAGCAGAACAATGATGAGACGATAGGAACTGGTAGATCCTACGAGTGCATCTTTTGCAAGAGAGGCTTCACCACAGCACAAGCCTTAGGTGGACACATGAACATACACAGAAAAGAAAGAGCCAACAACAAGAACAAACCCGTTTCAATATTCCCTAATTCTCCTCCTTCGAGTTCAAACAAAGTTGATGGCAACAACAACTATGCAGATCTCGGATTCTTCTCACAATTTCCAAGCCATTCCAGTACTGCACCAAGTATTAAACCTTCTCATGGTGAGTTTTTGTGTGTAGAAAACCAAAGGGGTCATCATGTGTTTGCGCAAGATTGGAGGAAGAGAAATTTGAGCTTGTATAGTAATCCATTGCATTTTCATGAAATTAAAGATAAGCTTGAAGAGAGTGAAGGGGATGGACTAGATTTGGAGCTGAGGCTTGGTCATCATCATCCATAG 522 0.4195 MDLNYPEESYSKSSSEETDDPSSEQNNDETIGTGRSYECIFCKRGFTTAQALGGHMNIHRKERANNKNKPVSIFPNSPPSSSNKVDGNNNYADLGFFSQFPSHSSTAPSIKPSHGEFLCVENQRGHHVFAQDWRKRNLSLYSNPLHFHEIKDKLEESEGDGLDLELRLGHHHP 173
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02186 173 ProSiteProfiles Zinc finger C2H2 type domain profile. 37 64 IPR013087 -
Cca03g02186 173 MobiDBLite consensus disorder prediction 69 87 - -
Cca03g02186 173 Pfam C2H2-type zinc finger 37 62 - -
Cca03g02186 173 MobiDBLite consensus disorder prediction 1 31 - -
Cca03g02186 173 PANTHER TRANSCRIPTIONAL REGULATOR TAC1-LIKE 8 171 - -
Cca03g02186 173 SUPERFAMILY beta-beta-alpha zinc fingers 35 64 IPR036236 -
Cca03g02186 173 Gene3D Classic Zinc Finger 9 90 - -
Cca03g02186 173 MobiDBLite consensus disorder prediction 61 87 - -
Cca03g02186 173 ProSitePatterns Zinc finger C2H2 type domain signature. 39 59 IPR013087 -
Cca03g02186 173 PANTHER OS07G0101800 PROTEIN 8 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02186 Cca-Chr3 42579415 42579936 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02186 35 173 C2H2 Transcription Factor Family AT4G17810 37.143 1.13e-13 63.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02186 - - gmx:102664910 218.009
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02186 03 42579415 42579936 Cca03g02186 03 42579415 42579936 ECH
Cca03g02186 03 42579415 42579936 Cca02g01047 02 27284581 27285859 PCT