Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02185 ATGGAAGGAAACTATGTGACCAGAAACATGCATAAAGGGGAGAGGTTTGGGTTTGAGGAGCATTCATGGGGTAGTTCATGGACTGCTAGAAATTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCCGCTCAAGCCTTGGGCGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGACTGAGATCTTCCCTACCCTCATCATGGGTTTCTGAGTCTcctaaacctaaccctagcattaaacctaataacccttacccaacTCATCTTTCACCCTCCTCTCCATCATCTTTTCTATCTAATAAGCTTTTGAATTGTGCACATATTTCTCCACTTTGTAGCCCTCCTTTGGCTTTGTCTTCTTCACTGACCCCAGCTTCATCTAATGGAGATAAGAAACCAAGACTTCTTCCTCTTTCGATTCCTCAAAGCAGTGAAGAAATTAAGACGAGTAAGAACACAGGAAGTGGTTTAGGAGTTGAAGAAGCACAGGGTTGTGTAATAGGAGAGGAACACAAGGGTTTCAATTTCAAGAGTAATGAGCATAACATCAAGCTGGAGTTGGGGATAGGACTGCTTAAACAACCAAAGGAGAAGTTAGATTTGGAGCTACGATTGGGGCACTTCTAG 630 0.4048 MEGNYVTRNMHKGERFGFEEHSWGSSWTARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSWVSESPKPNPSIKPNNPYPTHLSPSSPSSFLSNKLLNCAHISPLCSPPLALSSSLTPASSNGDKKPRLLPLSIPQSSEEIKTSKNTGSGLGVEEAQGCVIGEEHKGFNFKSNEHNIKLELGIGLLKQPKEKLDLELRLGHF 209
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02185 209 PANTHER OS07G0101800 PROTEIN 19 208 - -
Cca03g02185 209 MobiDBLite consensus disorder prediction 121 157 - -
Cca03g02185 209 Pfam C2H2-type zinc finger 32 56 - -
Cca03g02185 209 MobiDBLite consensus disorder prediction 143 157 - -
Cca03g02185 209 SMART c2h2final6 32 54 IPR013087 -
Cca03g02185 209 ProSiteProfiles Zinc finger C2H2 type domain profile. 32 59 IPR013087 -
Cca03g02185 209 MobiDBLite consensus disorder prediction 64 93 - -
Cca03g02185 209 Gene3D Classic Zinc Finger 18 75 - -
Cca03g02185 209 SUPERFAMILY beta-beta-alpha zinc fingers 29 58 IPR036236 -
Cca03g02185 209 ProSitePatterns Zinc finger C2H2 type domain signature. 34 54 IPR013087 -
Cca03g02185 209 PANTHER TRANSCRIPTIONAL REGULATOR SUPERMAN 19 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02185 Cca-Chr3 42556921 42558209 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02185 19 207 C2H2 Transcription Factor Family AT3G23130 37.056 9.55e-23 89.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02185 zf-C2H2_6 6.8e-07 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02185 - - gmx:102660083 246.899
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02185 03 42556921 42558209 Cca02g01048 02 27295724 27296347 PCT