Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Cca03g02185 | ATGGAAGGAAACTATGTGACCAGAAACATGCATAAAGGGGAGAGGTTTGGGTTTGAGGAGCATTCATGGGGTAGTTCATGGACTGCTAGAAATTATGCTTGTAGCTTTTGCAAGAGAGAGTTCAAGTCCGCTCAAGCCTTGGGCGGCCACATGAATGTTCACAGAAGGGATAGGGCAAGACTGAGATCTTCCCTACCCTCATCATGGGTTTCTGAGTCTcctaaacctaaccctagcattaaacctaataacccttacccaacTCATCTTTCACCCTCCTCTCCATCATCTTTTCTATCTAATAAGCTTTTGAATTGTGCACATATTTCTCCACTTTGTAGCCCTCCTTTGGCTTTGTCTTCTTCACTGACCCCAGCTTCATCTAATGGAGATAAGAAACCAAGACTTCTTCCTCTTTCGATTCCTCAAAGCAGTGAAGAAATTAAGACGAGTAAGAACACAGGAAGTGGTTTAGGAGTTGAAGAAGCACAGGGTTGTGTAATAGGAGAGGAACACAAGGGTTTCAATTTCAAGAGTAATGAGCATAACATCAAGCTGGAGTTGGGGATAGGACTGCTTAAACAACCAAAGGAGAAGTTAGATTTGGAGCTACGATTGGGGCACTTCTAG | 630 | 0.4048 | MEGNYVTRNMHKGERFGFEEHSWGSSWTARNYACSFCKREFKSAQALGGHMNVHRRDRARLRSSLPSSWVSESPKPNPSIKPNNPYPTHLSPSSPSSFLSNKLLNCAHISPLCSPPLALSSSLTPASSNGDKKPRLLPLSIPQSSEEIKTSKNTGSGLGVEEAQGCVIGEEHKGFNFKSNEHNIKLELGIGLLKQPKEKLDLELRLGHF | 209 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Cca03g02185 | 209 | PANTHER | OS07G0101800 PROTEIN | 19 | 208 | - | - | |
Cca03g02185 | 209 | MobiDBLite | consensus disorder prediction | 121 | 157 | - | - | |
Cca03g02185 | 209 | Pfam | C2H2-type zinc finger | 32 | 56 | - | - | |
Cca03g02185 | 209 | MobiDBLite | consensus disorder prediction | 143 | 157 | - | - | |
Cca03g02185 | 209 | SMART | c2h2final6 | 32 | 54 | IPR013087 | - | |
Cca03g02185 | 209 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 32 | 59 | IPR013087 | - | |
Cca03g02185 | 209 | MobiDBLite | consensus disorder prediction | 64 | 93 | - | - | |
Cca03g02185 | 209 | Gene3D | Classic Zinc Finger | 18 | 75 | - | - | |
Cca03g02185 | 209 | SUPERFAMILY | beta-beta-alpha zinc fingers | 29 | 58 | IPR036236 | - | |
Cca03g02185 | 209 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 34 | 54 | IPR013087 | - | |
Cca03g02185 | 209 | PANTHER | TRANSCRIPTIONAL REGULATOR SUPERMAN | 19 | 208 | - | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Cca03g02185 | Cca-Chr3 | 42556921 | 42558209 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Cca03g02185 | 19 | 207 | C2H2 Transcription Factor Family | AT3G23130 | 37.056 | 9.55e-23 | 89.7 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Cca03g02185 | zf-C2H2_6 | 6.8e-07 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Cca03g02185 | - | - | gmx:102660083 | 246.899 |
Select | Gene_1 | Chr_1 | Start_1 | End_1 | Gene_2 | Chr_2 | Start_2 | End_2 | Event_name |
---|---|---|---|---|---|---|---|---|---|
Cca03g02185 | 03 | 42556921 | 42558209 | Cca02g01048 | 02 | 27295724 | 27296347 | PCT |