Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02178 ATGATTTTCTCCTCTCACGTAGCTCAATCTTCTTCAGATTATGATATCAAACCCAGTTTTACACAGATCATCGTAGCCTCTTCTATTGGGATGATGTTTGTCGTGGTCTTTCATTTTCGTCTGAAACAAATTAGAGATCGAAAGATCATCCCACGTATAAGATTATCACGCGCAGGCCACGTCCCAAAGCTTGAAAGGTTCTCCCATTACGTAGCTAGGCAAATGGGGTTCAAAGATAGAAGAAATTGTCCTCATCTATGTAGATTGGCTTCTGAATACATAAGGAAATACGACGGATTTGAGGACGATATATACGCCTTCTTTGAGAACGAACCAGATGCAGATTCACTTTATGTGAAGCTGGTAGAGGAGTTTGAGAGATGCATTCTTAGTTACTTTGGATTCCATTGGAACTATGGTGATATAATTATGAGTCAGGTGTTGAACTCGGAAAATGAGCCAAAAAAGAAGCTCAAGCACATAGTTATGGCAGCAACTAGGGAACAAAGGTTCGAGAGACTTGCGAAGAATCTGAAGGTGGCTAGAGTATTTAATACATTAGTAGAAGAGATGAAAGCAATGGGAATTGCTACAGGTGATGACTCTCAATGTACAGAGGTGATGGCGCCAGTAGCTCATAGCGATAGGAGCCCAGTGCTCCTCCTAATGGGTGGGGGTATGGGAGCTGGCAAGAGCACTGTGCTCAAGGATATTCTCAAAGAACCTTTCTGGGCAGGAGCTGCAGGAAATGCCGTAATCATTGAGGCAGATGCATTCAAAGAATCAGATGTCATCTATAAGGCCCTTAGTTCAAGAGGTCACCATGACATGATTCAAACAGCAGAACTGGTGCACCAATCATCCACAGATGCGGCCTCATCCCTCCTTGTAACAGCATTAAACGAGGGACGAGATGTTATTATGGATGGTACACTCTCTTGGGTGCCATTTGTTGTGCAGACAATAACAATGGCAAGGAATGTTCACCGTCGCCGTTACCGCATGGGAGCAGGCTATAGGGTGAAGGATGATGGAACTGTAATTGAAAATTATTGGGAAAGAATTGAAGGCGAAGAACCTGAACAAGATGGAGGCAAAAAGAGAAAACCATATAGGATAGAGCTGGTTGGTGTAGTATGTGATGCTTATCTTGCGGTTGTTAGAGGCATAAGGAGAGCTATCATGTGCAGAAGAGCAGTGAGAGTACAGTCACAGTTGAAATCCCACAGGAGATTTGCTGAGGCATTTATGACTTACTGTCAACTAGTGGATAATGCACGGCTATACTTCACAAACGCATTGGAAGGCCCTGCCAAGTTGATAGGATGGAAAGATAGAGACAAGACACTGCTTGTTGATCCAGATGAATTCGACTGTTTGAAGAGGCTTGCCAAGTTGAATGAAAATGCAAACTCCATTTATGAACTTTACAAGCATCCCAACCCAGCTTGTGAAGCTGGATCCGTATGGAAAGACATTGTATTATCTCCTTCAAGGTTGAACATCCAACAGGAGCTCAAGTATTCAATCCAAAAAATCGAAAGCGTGAAATATAACTTCACCGTGGAGAACAGATGA 1578 0.4297 MIFSSHVAQSSSDYDIKPSFTQIIVASSIGMMFVVVFHFRLKQIRDRKIIPRIRLSRAGHVPKLERFSHYVARQMGFKDRRNCPHLCRLASEYIRKYDGFEDDIYAFFENEPDADSLYVKLVEEFERCILSYFGFHWNYGDIIMSQVLNSENEPKKKLKHIVMAATREQRFERLAKNLKVARVFNTLVEEMKAMGIATGDDSQCTEVMAPVAHSDRSPVLLLMGGGMGAGKSTVLKDILKEPFWAGAAGNAVIIEADAFKESDVIYKALSSRGHHDMIQTAELVHQSSTDAASSLLVTALNEGRDVIMDGTLSWVPFVVQTITMARNVHRRRYRMGAGYRVKDDGTVIENYWERIEGEEPEQDGGKKRKPYRIELVGVVCDAYLAVVRGIRRAIMCRRAVRVQSQLKSHRRFAEAFMTYCQLVDNARLYFTNALEGPAKLIGWKDRDKTLLVDPDEFDCLKRLAKLNENANSIYELYKHPNPACEAGSVWKDIVLSPSRLNIQQELKYSIQKIESVKYNFTVENR 525
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02178 525 Pfam Zeta toxin 212 324 IPR010488 GO:0005524|GO:0016301
Cca03g02178 525 Gene3D - 201 449 IPR027417 -
Cca03g02178 525 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 213 345 IPR027417 -
Cca03g02178 525 PANTHER UNCHARACTERIZED 11 520 IPR044802 -
Cca03g02178 525 PANTHER P-LOOP NUCLEOSIDE TRIPHOSPHATE HYDROLASE SUPERFAMILY PROTEIN 11 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02178 Cca-Chr3 42398136 42402072 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02178 - - gmx:100794775 953.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02178 03 42398136 42402072 Cca02g01058 02 27460332 27509921 PCT