Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02177 ATGCCGCCGGCCCACGCGCTCCCCATCCCCAAGCCCAAGGAGGCCCATTACAGGGGCGTCCGCAAGCGCCCCTGGGGCCGCTTCGCAGCCGAGATCCGCGATCCCTGGAAAAAGACCCGAAAGTGGCTCGGCACTTTCGACACGGCCGAGGAGGCTGCCCGGGCCTACGACGCCGCCGCCAGAACCCTCCGCGGGCCCAAGGCCAAGACCAACTTTGCCTACGTCGTGGCTCCTGAACACCAAGCCCAGGCCCAAGAGCACCTCGCCAGAGAGGTGGAGTTTTGGGGGCCGGTGAGGTCCGAGTATAAGGGCTACAAGTTGGAGAATATCGCGGATTTTGTTGTTAAGGAGAAAAAGAAGCCCTTTTTGTTCGACCTTAACCTGCCGGCGCCGCTCTTCTGA 402 0.6269 MPPAHALPIPKPKEAHYRGVRKRPWGRFAAEIRDPWKKTRKWLGTFDTAEEAARAYDAAARTLRGPKAKTNFAYVVAPEHQAQAQEHLAREVEFWGPVRSEYKGYKLENIADFVVKEKKKPFLFDLNLPAPLF 133
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02177 133 ProSiteProfiles AP2/ERF domain profile. 16 73 IPR001471 GO:0003700|GO:0006355
Cca03g02177 133 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 84 - -
Cca03g02177 133 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 12 84 - -
Cca03g02177 133 SUPERFAMILY DNA-binding domain 16 74 IPR016177 GO:0003677
Cca03g02177 133 PRINTS Ethylene responsive element binding protein signature 17 28 IPR001471 GO:0003700|GO:0006355
Cca03g02177 133 PRINTS Ethylene responsive element binding protein signature 39 55 IPR001471 GO:0003700|GO:0006355
Cca03g02177 133 Gene3D AP2/ERF domain 15 75 IPR036955 GO:0003700|GO:0006355
Cca03g02177 133 Pfam AP2 domain 16 65 IPR001471 GO:0003700|GO:0006355
Cca03g02177 133 CDD AP2 15 75 IPR001471 GO:0003700|GO:0006355
Cca03g02177 133 SMART rav1_2 16 79 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02177 Cca-Chr3 42391061 42391900 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02177 13 72 AP2-EREBP Transcription Factor Family AT1G50640 86.667 1.36e-31 110
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Cca03g02177 AP2 1.6e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02177 K09286 - gmx:100816599 208.379