Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02176 ATGGAGGAGGTTGAAGAAGCTAATAGAGCAGCTGTTGAGAGTTGTCATAGAGTTCTGAATGTGTTGTCTCGGCAAGGGGATGAAGTTCAGTATAGGAATTTAGTTGTGGAAACTGGAGAAGCTGTAGTGAGGTTCAAGAATGTTGTTTCCAAGCTAAGTAGTGGTTTGGGTCATGCAAGAGTTAGGAAGAGCAAAAAACTTAACATCCCTTTTTCTCCAAGTATCCTCTTGGACAACCTCACCTGCAAAACCGATCACCATTCAAAAAATCTGCAGTTTCCTCACAATTCAGTTCAGGAATTGGGTCCAACCGTTAGAAGTTCACTCTACGCGGGGAACCCTTCTTTGGAGCTGAGCTCCAATGAGATAAGTCCTCTTCACCTAAGCCAACAAACTTCATCCACTCACTACCACATTCTGCAGCAGCAACAACAAAGGTTATTGTTGCAGCAGCAGCAGCAACAAATGAAACATCAAGCGGAAATGATGTTTCGAAGGAACAGCAGTGTCATAAACTTGAATTTTGATAGCTCTAGCTGCACGCCATCAATGTCTTCTACTAGGTCTTTCATTTCTTCCTTGAGCATAGATGGGAGTGTGGCTAACATGGATGGAAGTGCCTTCCATTTACTAGGAGCTGCAAACTCTGATCAGAATTCACAACAACACAAGAGAAAGTGTTCTGCCAGAGGTGATGAGGGTAGTGTGAAGTGTGGGAGCAGTACAAGATGCCATTGCTCAAAGAAGAGGAAACATAGAGTGAAAAGATCAATTAAGGTGCCTGCTACCAGCAACAAACTTGCAGATATCCCTCCGGATGATTATTCATGGAGGAAGTATGGGCAGAAACCAATCAAGGGATCACCTCACCCTAGGGGATACTATAAGTGCAGCAGCATGAGAGGGTGCCCTGCTAGGAAACATGTTGAGAGGTGCTTGGAAGAGCCTTCCATGCTAATTGTTACCTATGAAGGTGACCACAACCACCCCAAGTTACCAACACAATCTGCAAATGCTTGA 1020 0.4431 MEEVEEANRAAVESCHRVLNVLSRQGDEVQYRNLVVETGEAVVRFKNVVSKLSSGLGHARVRKSKKLNIPFSPSILLDNLTCKTDHHSKNLQFPHNSVQELGPTVRSSLYAGNPSLELSSNEISPLHLSQQTSSTHYHILQQQQQRLLLQQQQQQMKHQAEMMFRRNSSVINLNFDSSSCTPSMSSTRSFISSLSIDGSVANMDGSAFHLLGAANSDQNSQQHKRKCSARGDEGSVKCGSSTRCHCSKKRKHRVKRSIKVPATSNKLADIPPDDYSWRKYGQKPIKGSPHPRGYYKCSSMRGCPARKHVERCLEEPSMLIVTYEGDHNHPKLPTQSANA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02176 339 PANTHER WRKY DNA-BINDING PROTEIN 21-RELATED 2 338 - -
Cca03g02176 339 PANTHER WRKY TRANSCRIPTION FACTOR 21-RELATED 2 338 IPR044810 GO:0003700
Cca03g02176 339 SMART WRKY_cls 271 331 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02176 339 Pfam Plant zinc cluster domain 224 269 IPR018872 -
Cca03g02176 339 Gene3D WRKY domain 255 333 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02176 339 SUPERFAMILY WRKY DNA-binding domain 269 331 IPR036576 GO:0003700|GO:0006355|GO:0043565
Cca03g02176 339 Pfam WRKY DNA -binding domain 273 330 IPR003657 GO:0003700|GO:0006355|GO:0043565
Cca03g02176 339 ProSiteProfiles WRKY domain profile. 266 332 IPR003657 GO:0003700|GO:0006355|GO:0043565
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02176 Cca-Chr3 42376917 42379524 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02176 1 336 WRKY Transcription Factor Family AT2G30590 56.250 1.11e-125 363
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF WRKY Cca03g02176 WRKY 7.4e-26 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02176 - - gmx:100127372 532.332