Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02174 ATGCAGGGAGAGGGAGTGAGCGCGCGAGTGGGTTGTTCGAGCGAGGTAGCGTCCATGCCGAATCAGGTGGTGCGCGTGCGAAGGGACACGATTTCAGCATGCATGACTTGCCCACTCTGCAACAAGTTGTTCAGGGAAGCCACAACCATATCCGAATGCCTTCACACGTTTTGCAGGAAGTGTATTTACGATAAAATTACTGATGAGGAAATAGAGTGCTGTCCAATATGCAACACTGATTTGGGCTGTGTTCCACTCGAGAAACTGAGGCCAGACCACAGTTTGCAAGATGTAAGGGCCAAAGTTTTCCCCTTAAAGGGAAGAAAGGTGAAAGCACCTGAACTTGTTACCTCAGTACCATTACCAGCTAGGAGAAAGGAGAGATCTCTTTCATCATTGGTGGTCAGCACTCCAAGGGTATCTACACAGGCAACCATGACAGGAAGAAGAACAAAACCTACAAGAAAGGCTAGTGGTCTGCGGTCCACTAGTTTTTCCATTGAAAAGTCCATTAAAAAAGAGGAAGAATTACTGGAAGATCATCCTGAGAGTTCAAGCTCACCTGACACTTCAAATAAGTTTGCTCAGAATTCTGGACAGAGTATGTCCCCTTGTGAGGGTAGTCAATCCATACCCAATAAAGGATCAGAGAATGGTGCTGAACAATGGGATGGAAAATTGGATCTTTGGAAACCTTTGAATTGTTTAGTAGAGGTTGCAAGTAGGAGTAAATCTTTTAAGTCTAATGTTCAAGGGTCTGATGGAAAATTAGAAACCATACAAGTAAATGAGAATGACTCTCAAGTGCAGAAAACCAAAAATAAGGAAATTAAGCGTAAGGCAAAAGTTGATGATGAAAAGATTAGCCCTTATCCTGTCTCTTCAGACACAGCAAAACCCAATAAACTGCGCAGAATACGCAAGAAAAAGGAGCCTGCTTCTGGAGAATCAGGCATATCCCCCCAAGCTGTGTTAGATTCTGCCAGCAATAGACTCTTAAGGACTGGTCCAATTTGGTTCTCCTTAGTAGCTTCTGAAAACCAGGAAGGAGATGCACCCTTGCCCCAAATTCCTGCAAGTTATGTGAGAATAAAGGATGGTAGCGTACCTGTCTCATTCATCCAAAAATACCTAATGAAGAAACTAGATTTGACCAGTGAAACAGAGGTTGAGATTAAATGTATGGGACAACCAGTGCTCCCTACACTGCGGCTATATAATTTGATTGAGTTGTGGCTTGATACGGCGTCCACGTCACAGAGAATTCCAGCAACTATTGGATCCTCAGCAAAGGAATTTGTCATGGTCCTGGCTTATGCACGCAAGGTTCCACACCCATAA 1341 0.4392 MQGEGVSARVGCSSEVASMPNQVVRVRRDTISACMTCPLCNKLFREATTISECLHTFCRKCIYDKITDEEIECCPICNTDLGCVPLEKLRPDHSLQDVRAKVFPLKGRKVKAPELVTSVPLPARRKERSLSSLVVSTPRVSTQATMTGRRTKPTRKASGLRSTSFSIEKSIKKEEELLEDHPESSSSPDTSNKFAQNSGQSMSPCEGSQSIPNKGSENGAEQWDGKLDLWKPLNCLVEVASRSKSFKSNVQGSDGKLETIQVNENDSQVQKTKNKEIKRKAKVDDEKISPYPVSSDTAKPNKLRRIRKKKEPASGESGISPQAVLDSASNRLLRTGPIWFSLVASENQEGDAPLPQIPASYVRIKDGSVPVSFIQKYLMKKLDLTSETEVEIKCMGQPVLPTLRLYNLIELWLDTASTSQRIPATIGSSAKEFVMVLAYARKVPHP 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02174 446 MobiDBLite consensus disorder prediction 244 321 - -
Cca03g02174 446 ProSiteProfiles Zinc finger RING-type profile. 37 78 IPR001841 -
Cca03g02174 446 MobiDBLite consensus disorder prediction 269 289 - -
Cca03g02174 446 MobiDBLite consensus disorder prediction 167 183 - -
Cca03g02174 446 Pfam Zinc finger, C3HC4 type (RING finger) 37 77 - -
Cca03g02174 446 MobiDBLite consensus disorder prediction 127 222 - -
Cca03g02174 446 SMART ring_2 37 77 IPR001841 -
Cca03g02174 446 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 21 129 IPR013083 -
Cca03g02174 446 MobiDBLite consensus disorder prediction 244 268 - -
Cca03g02174 446 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 21 442 - -
Cca03g02174 446 ProSitePatterns Zinc finger RING-type signature. 53 62 IPR017907 -
Cca03g02174 446 MobiDBLite consensus disorder prediction 130 166 - -
Cca03g02174 446 SUPERFAMILY RING/U-box 31 101 - -
Cca03g02174 446 MobiDBLite consensus disorder prediction 184 217 - -
Cca03g02174 446 PANTHER E3 UBIQUITIN PROTEIN LIGASE DRIP1 21 442 IPR044807 GO:0004842
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02174 Cca-Chr3 42354530 42360354 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02174 21 365 C3H Transcription Factor Family AT2G30580 54.046 1.30e-113 335
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02174 K16277 - gmx:100815540 769.229
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02174 03 42354530 42360354 Cca02g01067 02 27623956 27630118 PCT