Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02168 ATGGAGGTTGGCCTCAAGAAGGAGAACATGGGGTTTGAGGAAACTGAGCTAAGGCTTGGATTGCCTGGAAACGCTGCCACTGAAGAAGTTGTCAGAAAGAGAGGTTTCTCTGAGACTGAAACTCATGATCATGAAACTGCCACAGTGGATTTGATGCTTAATCTGTCTTCAAAGGAACCAACTACTGTGGCAGATCCAACTGATAAACACAACACTTTGCCTAAGGAGAAGACCCTTCTGCCTGCAGATCCTGCTAAGCCTCCAGCCAAGGCGCAGGTGGTGGGTTGGCCACCTGTGAGGTCCTTCCGGAAGAACATGTTAGCTGTGCAAAAGAGCGTTGGAGAAGAGAGTGAGAAGAACAGTAGCCCTAATCCAAGCTTTGTGAAAGTTAGCATGGATGGAGCACCTTACCTCCGCAAAGTGGACTTGAAGATGTACAAGAGTTACCGAGAGCTCTCTGATTCTTTGGGCAATATGTTCAGCTCCTTCACAATTGGCAATTGTGAATCCCAAGGAATGAAGGATTTCATGAATGAGAGTAAGCTGATGGATCTTTTGAACAGCTCTGATTATGTCCCAACCTATGAGGACAAGGATGGTGACTGGATGCTTGTCGGTGATGTCCCATGGGAGATGTTTGTTGAATCATGCAAGCGTTTACGCATAATGAAAGGAAAGGAAGCTATTGGTCTTGGTCTTGCACCAAGAGCCATGGCGAAATCGAAGAACAGGAGCTAG 738 0.4675 MEVGLKKENMGFEETELRLGLPGNAATEEVVRKRGFSETETHDHETATVDLMLNLSSKEPTTVADPTDKHNTLPKEKTLLPADPAKPPAKAQVVGWPPVRSFRKNMLAVQKSVGEESEKNSSPNPSFVKVSMDGAPYLRKVDLKMYKSYRELSDSLGNMFSSFTIGNCESQGMKDFMNESKLMDLLNSSDYVPTYEDKDGDWMLVGDVPWEMFVESCKRLRIMKGKEAIGLGLAPRAMAKSKNRS 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02168 245 ProSiteProfiles PB1 domain profile. 125 225 IPR000270 GO:0005515
Cca03g02168 245 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 7 236 IPR003311 GO:0005634|GO:0006355
Cca03g02168 245 PANTHER AUXIN-INDUCED PROTEIN AUX28 7 236 - -
Cca03g02168 245 SUPERFAMILY CAD & PB1 domains 116 224 - -
Cca03g02168 245 MobiDBLite consensus disorder prediction 58 92 - -
Cca03g02168 245 Gene3D - 119 236 - -
Cca03g02168 245 Pfam AUX/IAA family 14 232 IPR033389 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02168 Cca-Chr3 42286795 42290241 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02168 118 228 B3 DNA Binding Superfamily AT3G61830 33.333 4.60e-09 54.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Cca03g02168 AUX_IAA 1.2e-83 CL0072