Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02167 ATGGGGAGCTATGAAAGTGAGCTCAATCTTAAGGCCACAGAGTTGAGGTTGGGATTGCCAGGGAGTGATGAGCCTGAGAAACGTTCATGCAGTGTTAGAAGCAACAAGAGATCTTCACGAGAATCCAGTGTGGAAGAGTCCAGGTGCAAAAGCAACGTTAACTCTGATGATTCCACAACCACAAGTGATCATGACCAAGAAAGTGTCCAACCTGCAAAGGTACAAGTAGTGGGGTGGCCACCGATTAGATCTTATAGGAAAAATAGTCTGCAGCAGAAGAAGGTGGAGGGTGATGGAAGTGGAATCTACGTGAAAGTGAGCATGGCTGGTGCACCTTACTTGAGGAAGATAGATCTCAAGGTTTACAAGAGCTACCCAGAACTCCTCATGGCATTGCAAACTTTGTTCAAGTGCACATTTGGTGAATATTCAGAAAGGGAAGGCTACAATGGATCTGAATACGCTCCTACTTATGAAGACAAAGATGGTGACTGGATGCTGGTTGGGGATGTTCCATGGAACATGTTTGTATCCTCCTGCAAGAGGCTGAGAATAATCAAAGGATCAGAAGCAAAGGGATTGGGCTGTTTATGA 594 0.4529 MGSYESELNLKATELRLGLPGSDEPEKRSCSVRSNKRSSRESSVEESRCKSNVNSDDSTTTSDHDQESVQPAKVQVVGWPPIRSYRKNSLQQKKVEGDGSGIYVKVSMAGAPYLRKIDLKVYKSYPELLMALQTLFKCTFGEYSEREGYNGSEYAPTYEDKDGDWMLVGDVPWNMFVSSCKRLRIIKGSEAKGLGCL 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02167 197 MobiDBLite consensus disorder prediction 20 52 - -
Cca03g02167 197 MobiDBLite consensus disorder prediction 1 73 - -
Cca03g02167 197 PANTHER AUXIN-INDUCED PROTEIN 3 195 - -
Cca03g02167 197 Gene3D - 96 197 - -
Cca03g02167 197 Pfam AUX/IAA family 13 195 IPR033389 -
Cca03g02167 197 MobiDBLite consensus disorder prediction 53 69 - -
Cca03g02167 197 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 3 195 IPR003311 GO:0005634|GO:0006355
Cca03g02167 197 ProSiteProfiles PB1 domain profile. 101 193 IPR000270 GO:0005515
Cca03g02167 197 SUPERFAMILY CAD & PB1 domains 98 185 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02167 Cca-Chr3 42267899 42269469 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02167 104 194 B3 DNA Binding Superfamily AT2G46530 37.363 1.02e-11 61.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Cca03g02167 AUX_IAA 4.1e-57 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02167 K14484 - gmx:100792134 314.694