Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02166 ATGGCGAATAACCCTTCCGACGCTCCCGCCGACGACTTCCTCGAGCAAATCCTCGGCCTCCCCACCTTCGCCTCCGCCGACTCCGCCTTGGCCGCCGCCGATGTCGCCCTCGCCGCCGCGCCTCCCATGATGCTCCAGCTCAACTCCGCCGACGCCAACGCTCACCTCGCCGGCGCCGCCTTCCACGCGCCGGTGTACCAGCTAGGGTTGAGCCTGGACCAAGGCAAAGGAGCGTTCATGAAGCCCGAGGAAGCCTCCGCCAGCGGAAAGCGCTTTCGCGACGACGTCGTTGATGCTAGAGCTAAGAATGTTTATCATGGGCAACCCATGCCTACTAGTATGCCTTCTGCTCCACATCCTCCCACAATACGTCCTAGGGTGCGGGCAAGAAGAGGGCAGGCTACGGATCCACACAGCATAGCTGAACGGTTACGCAGGGAAAGAATAGCAGAAAGAATCAGGGCATTGCAAGAACTGGTTCCTAGTGTCAACAAGACGGATAGAGCTGCCATGTTAGATGAAATTGTGGATTATGTCAAGTTCTTAAGGCTTCAAGTGAAGGTTTTGAGCATGAGTAGATTGGGTGGAGCTGGTGCAGTGGCACCACTTGTAACTGACATCCCATTATCGTCAGTTGAGGAAGAAGGTGGTGAAGGTGCGAGAAACCGACCAGCTTGGGACAAGTGGTCAAATGATGGAACAGAACGACAGGTAGCTAAGCTCATGGAAGAAAATGTTGGTGCTGCCATGCAGTTTCTTCAATCAAAGGCGCTCTGCATAATGCCCATCTCACTGGCTTCGGCAATATACCAGTCACAACCACCGGACACTTCAAGTATAGTGAAGCCTGAAACTAATCCTCCTTCATAG 870 0.5437 MANNPSDAPADDFLEQILGLPTFASADSALAAADVALAAAPPMMLQLNSADANAHLAGAAFHAPVYQLGLSLDQGKGAFMKPEEASASGKRFRDDVVDARAKNVYHGQPMPTSMPSAPHPPTIRPRVRARRGQATDPHSIAERLRRERIAERIRALQELVPSVNKTDRAAMLDEIVDYVKFLRLQVKVLSMSRLGGAGAVAPLVTDIPLSSVEEEGGEGARNRPAWDKWSNDGTERQVAKLMEENVGAAMQFLQSKALCIMPISLASAIYQSQPPDTSSIVKPETNPPS 289
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02166 289 PANTHER BINDING PROTEIN, PUTATIVE-RELATED 7 278 - -
Cca03g02166 289 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 7 278 - -
Cca03g02166 289 Pfam Helix-loop-helix DNA-binding domain 138 182 IPR011598 GO:0046983
Cca03g02166 289 SMART finulus 139 188 IPR011598 GO:0046983
Cca03g02166 289 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 131 192 IPR036638 GO:0046983
Cca03g02166 289 Gene3D - 128 190 IPR036638 GO:0046983
Cca03g02166 289 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 133 182 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02166 Cca-Chr3 42253908 42258333 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02166 61 288 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G02590 81.277 5.31e-122 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02166 HLH 1e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02166 - - ccaj:109808880 515.768