Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02164 ATGGAGACGCACGGTGGAGGACCCCTTCGCTCCCGCAGTTCCCAGTCACCTTCTCCTTCCCACTCCGCCACCTCATCCATCCACAAGCGCACGCTCGCGTCGGAGGACCACGCGCCTCCCTTCCCTCCCTCTTCCTTCTCCGCCGACACTCGCGACGGCGCCCTCACCTCCAATGACGACCTCGAGAGCATCTCCGCCCGCggcgccgactccgacgacgacgacgactccgaggatgccgttgtcgacgacgacgaggacgactacgacaacgaATCCTCCATGCGCACCTTCACTGCTTCTAGACTCAGCAACCCTCCCTCCGCTCCCCGCAACACTAAGCTCAAGTCCGATAACTCCGCCGTCAAAATTGAGAATTCCGACGCCACCAAGGACGCCGGAACTACCACTGCGGGTTCCGTCCCCGGGATTGTGATCAAGGAGGACGCCACTAAGATTTTTACTGACAATATGCAAGCAAGTGGGGCTTACGCCGCCAGGGAAGAGAGTCTCAAGAAGGAGGAGGAAGCTGGGAGGCTCAAATTTGTATGCATTTCGAACGATGGTGTTGATGATCATATGATTTGGCTGATTGGATTGAAGAATATATTTGCTAGACAACTTCCCAATATGCCCAAAGAATACATTGTCAGACTTCTTTTTGATAGGAGCCACAAGTCTGTAATGGTTATAAGGCGTAATCATGTTGTTGGAGGCATTACATATCGTCCATATGCTAGTCAGAAGTTCGGTGAGATAGCCTTTTGTGCAATTACAGCTGATGAGCAAGTCAAGGGTTATGGTACCAGATTGATGAATTACTTAAAGCAGTTTGCACGTGATTTAGATGGGTTGACACATTTTCTCACATATGCTGACAATAATGCTGTTGGCTATTTTATCAAACAGGGTTTTACAAAAGAGATTCACCTGGATAAAGATCGATGGCAAGGGTATATAAAGGATTATGATGGAGGAATTCTCATGGAATGCAAGATAGATCCAAAGCTCCCTTACACTGATTTGTCAACTATGATCCGTCGTCAAAGACAGGCAATTGATGAAAAAATCAGGGAGCTGTCAAACTGTCACATCGTTTATCCTGGAATTGATTTTCAGAAGAATGAAGCTGGTATTCCTAAAAAAATTATTCTTGACATCCCTGGTTTGAGGGAGGCTGGATGGACTCCTGATCAGTGGGGTCATTCACGATTCAGAAGTTTATGTAGTTCTGCCGACAATGCTACAAATCAAAAACATTTGTCTGTGTTTATGCGTTCACTTCTAAAGGCACTGCACGATCACGCTGATTCTTGGCCATTCAAGGAACCAGTTGATGCACGGGATGTTCCTGATTATTATGACATCATCAAAGATCCAATCGATTTGAAGACGATGTCTAAGAGGGTGGAATCAGAGCAATATTACGTCACATTTGAGATGTTTCTTGCGGATGTCAGAAGAATGATTTCGAATGCACGCACTTATAATTCTCCAGATACCATTTATTTCAAATGTGCTACAAGGTTAGACAACTTCTTTCAAAGCAAAGTGCAAGCAGGTCTTCAGTCTCAGTCTGGTTCTAAAATTCCGTAG 1596 0.4355 METHGGGPLRSRSSQSPSPSHSATSSIHKRTLASEDHAPPFPPSSFSADTRDGALTSNDDLESISARGADSDDDDDSEDAVVDDDEDDYDNESSMRTFTASRLSNPPSAPRNTKLKSDNSAVKIENSDATKDAGTTTAGSVPGIVIKEDATKIFTDNMQASGAYAAREESLKKEEEAGRLKFVCISNDGVDDHMIWLIGLKNIFARQLPNMPKEYIVRLLFDRSHKSVMVIRRNHVVGGITYRPYASQKFGEIAFCAITADEQVKGYGTRLMNYLKQFARDLDGLTHFLTYADNNAVGYFIKQGFTKEIHLDKDRWQGYIKDYDGGILMECKIDPKLPYTDLSTMIRRQRQAIDEKIRELSNCHIVYPGIDFQKNEAGIPKKIILDIPGLREAGWTPDQWGHSRFRSLCSSADNATNQKHLSVFMRSLLKALHDHADSWPFKEPVDARDVPDYYDIIKDPIDLKTMSKRVESEQYYVTFEMFLADVRRMISNARTYNSPDTIYFKCATRLDNFFQSKVQAGLQSQSGSKIP 531
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02164 531 PANTHER GH11602P 9 526 IPR037800 GO:0004402
Cca03g02164 531 MobiDBLite consensus disorder prediction 8 29 - -
Cca03g02164 531 MobiDBLite consensus disorder prediction 71 91 - -
Cca03g02164 531 CDD NAT_SF 227 282 - -
Cca03g02164 531 MobiDBLite consensus disorder prediction 1 138 - -
Cca03g02164 531 ProSiteProfiles Bromodomain profile. 433 504 IPR001487 GO:0005515
Cca03g02164 531 Pfam Acetyltransferase (GNAT) family 214 305 IPR000182 GO:0016407
Cca03g02164 531 MobiDBLite consensus disorder prediction 49 64 - -
Cca03g02164 531 Gene3D - 406 527 IPR036427 GO:0005515
Cca03g02164 531 PRINTS Bromodomain signature 436 449 IPR001487 GO:0005515
Cca03g02164 531 PRINTS Bromodomain signature 450 466 IPR001487 GO:0005515
Cca03g02164 531 PRINTS Bromodomain signature 485 504 IPR001487 GO:0005515
Cca03g02164 531 MobiDBLite consensus disorder prediction 94 137 - -
Cca03g02164 531 Gene3D - 176 340 - -
Cca03g02164 531 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 195 334 IPR016181 -
Cca03g02164 531 SUPERFAMILY Bromodomain 414 519 IPR036427 GO:0005515
Cca03g02164 531 ProSiteProfiles Gcn5-related N-acetyltransferase (GNAT) domain profile. 180 334 IPR000182 GO:0016407
Cca03g02164 531 Pfam Bromodomain 426 508 IPR001487 GO:0005515
Cca03g02164 531 ProSitePatterns Bromodomain signature. 438 496 IPR018359 -
Cca03g02164 531 CDD Bromo_gcn5_like 421 520 - -
Cca03g02164 531 PANTHER BNAC04G26160D PROTEIN 9 526 - -
Cca03g02164 531 SMART bromo_6 414 523 IPR001487 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02164 Cca-Chr3 42233725 42239820 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR GNAT Cca03g02164 Acetyltransf_1 5.6e-09 CL0257
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02164 K06062 - gmx:100791610 861.292