Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02159 ATGGGTCTAGAAAAGAATCCTCGTGTATTTCTAGATGTCTCAATTGATGGGGACCCTGTGGAAAGAATTGTTATTCAGCTTTTTGCTAGTGTAGTTCCTAAGACAGCGGAGAATTTTCGGGCACTTTGTACAGGTGAGAAGGGCGTTGGAGAATCAACTGGGAAACCTTTGCATTATAAAGGAACATCCTTTCATCGTATAATTAGAGGTTTTATGGCTCAAGGTGGCGATTTTTCTAGGGGTAACGGCACAGGTGGAGAAATTATTTACGGAGGCAAATTTGCAGATGAAAATTTCAAGCTAACACATGATGGACCTGGCTTTCTTTCTATGGCTAATAGTGGTCCTAACACAAATGGATCTCAGTTCTTTATTACATTCAAGCGCCAACCTCATCTTGATGGGAAGCATGTTGTTTTTGGAAAAGTTGTCAACGGAATGGATATTTTAAAGAAAATTGAGCAGGTGGGAACATCTGATGGTAAACCTACCCAGCCAGTGAAAATTATTGATTGTGGTGAAGTCTCTGAAACAAAAATTCAGCATACTGTTGAGAAGGAGAAAGGGAAAAGGAGAAAATCAGGGAAATCCCAAACTTCTGATGATAGTTCTGACAAAAAATTAAAGGAAAAAAGAAAAAAATCTTCCAAAGACACGAGGAAGAGAAGGAGAAGATACTCAACAtctgatagtgatagtgatagttattcctcagattctgagtcagattcagcttcagattctgaatcagattcatctgattctgattctAGTTCCTCTAGTTATGGGAAACACCAGAAGAGGAGGAGAAATCAGCGCAAGCATGGGAAGAAGAAGAAAATTGGACGAAAGCAGCTAAAGAGAAGCAAGCATGGTAGAAGTAGAAGATCAAAACATAAGTCTAGACGGAGTTCTGAGGATTCAAGTGATACGGAAAGTGATAGCTCTAGTGCCAGTAGCTCTGGTGATGAGAAAGCTGATCGTCATCGCTCAGGTCGTAAATCACATCCTGACAATAAAGCACAAAAGAATCTAGACACAGGAAAGCAATCTTCTAGCCTTCCTCGACAAAGTCAAACTATTCCTGAACAAATAATGGATCCCAAGGTTAGAAGAACTGTGGATAAACAATCACATGAAGAAGGTGAATTATCGCCAGAAAATGGTGCTTTTGTGAATAACGGGCATGATACTCAAGCTGAATTTAGTAAACCTGCTAAGCAACATGCTAATTCCGATGATTCAAATCACAATAGAGGTGCAAGTCCTGGAAGAAGTCCTACCAGGGATTCTGGTGAGCTAAAGCAAGGACATCCTCTGTCATTGGCCAGTCCTGGCCATAAAGCATCTGAACCTGCTGTGCCCCAACATGGTCAAGGGTTTTCAAAAAGCCCTTCACCAAATGGCATGCCTAAGCGTATTAAAAAAGGACGTGGCTTTACTGAGCGTTATGCCTTCGCACGCAGATATCGAACTCCATCTCCAGAGCGGTCTCCTCGTACATATCGTTATGGTGATAGAAATATAAGAAGGAACTTCGATAATAGAAACACAAGCTACAGAAGTTATTCTGAGCGCTCTCCACCACGGCGTTTTCGAAGCCCACCAGGGGGAAGGAGTCGTCAAAGATACGTGAGCAGAAGAAGTCGGAGTAGGAGCATCTCCCGGAGTCCAGTGCGTGGGCGTTTTAGAGATCGTGGGCGGAGCCGGAGCCGGAGTCCAAGACGCAGTCTTAGTCCAGAGGACAGGCGGCCTCCCATAAGTGACAGATTAAAATCCCGACTTGGCCCAAGGAGTGATCAACGACCGGCAGACAGGGGTCGGTCAAGGTCCAAGTCTAGGAGTTCTGGCTCCAGATCCCCTGATGCTACCCCACCAAAACGATATGATAAAAGGACTTCCGTATCTCGTAGCAGGTCTAGATCCAGCTCTTCATCCGGTCAAAAGGGTTTAGTTTCTTACGGAGATGCTAGTCCTGATTCTGGGGCTAGGTAG 1995 0.4226 MGLEKNPRVFLDVSIDGDPVERIVIQLFASVVPKTAENFRALCTGEKGVGESTGKPLHYKGTSFHRIIRGFMAQGGDFSRGNGTGGEIIYGGKFADENFKLTHDGPGFLSMANSGPNTNGSQFFITFKRQPHLDGKHVVFGKVVNGMDILKKIEQVGTSDGKPTQPVKIIDCGEVSETKIQHTVEKEKGKRRKSGKSQTSDDSSDKKLKEKRKKSSKDTRKRRRRYSTSDSDSDSYSSDSESDSASDSESDSSDSDSSSSSYGKHQKRRRNQRKHGKKKKIGRKQLKRSKHGRSRRSKHKSRRSSEDSSDTESDSSSASSSGDEKADRHRSGRKSHPDNKAQKNLDTGKQSSSLPRQSQTIPEQIMDPKVRRTVDKQSHEEGELSPENGAFVNNGHDTQAEFSKPAKQHANSDDSNHNRGASPGRSPTRDSGELKQGHPLSLASPGHKASEPAVPQHGQGFSKSPSPNGMPKRIKKGRGFTERYAFARRYRTPSPERSPRTYRYGDRNIRRNFDNRNTSYRSYSERSPPRRFRSPPGGRSRQRYVSRRSRSRSISRSPVRGRFRDRGRSRSRSPRRSLSPEDRRPPISDRLKSRLGPRSDQRPADRGRSRSKSRSSGSRSPDATPPKRYDKRTSVSRSRSRSSSSSGQKGLVSYGDASPDSGAR 664
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02159 664 MobiDBLite consensus disorder prediction 344 364 - -
Cca03g02159 664 MobiDBLite consensus disorder prediction 368 383 - -
Cca03g02159 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 27 42 IPR002130 GO:0000413|GO:0003755
Cca03g02159 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 64 76 IPR002130 GO:0000413|GO:0003755
Cca03g02159 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 107 122 IPR002130 GO:0000413|GO:0003755
Cca03g02159 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 122 134 IPR002130 GO:0000413|GO:0003755
Cca03g02159 664 PRINTS Cyclophilin peptidyl-prolyl cis-trans isomerase signature 135 150 IPR002130 GO:0000413|GO:0003755
Cca03g02159 664 MobiDBLite consensus disorder prediction 543 557 - -
Cca03g02159 664 ProSitePatterns Cyclophilin-type peptidyl-prolyl cis-trans isomerase signature. 59 76 IPR020892 GO:0003755|GO:0006457
Cca03g02159 664 MobiDBLite consensus disorder prediction 475 514 - -
Cca03g02159 664 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE CYP63 4 408 - -
Cca03g02159 664 Gene3D - 2 182 IPR029000 -
Cca03g02159 664 MobiDBLite consensus disorder prediction 391 406 - -
Cca03g02159 664 CDD cyclophilin_ABH_like 7 173 - -
Cca03g02159 664 PANTHER PEPTIDYL-PROLYL CIS-TRANS ISOMERASE 4 408 - -
Cca03g02159 664 SUPERFAMILY Cyclophilin-like 5 175 IPR029000 -
Cca03g02159 664 Pfam Cyclophilin type peptidyl-prolyl cis-trans isomerase/CLD 20 173 IPR002130 GO:0000413|GO:0003755
Cca03g02159 664 MobiDBLite consensus disorder prediction 572 612 - -
Cca03g02159 664 MobiDBLite consensus disorder prediction 321 343 - -
Cca03g02159 664 MobiDBLite consensus disorder prediction 180 212 - -
Cca03g02159 664 MobiDBLite consensus disorder prediction 264 300 - -
Cca03g02159 664 MobiDBLite consensus disorder prediction 638 652 - -
Cca03g02159 664 MobiDBLite consensus disorder prediction 180 664 - -
Cca03g02159 664 ProSiteProfiles Cyclophilin-type peptidyl-prolyl cis-trans isomerase domain profile. 10 174 IPR002130 GO:0000413|GO:0003755
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02159 Cca-Chr3 42187595 42194717 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02159 25 171 U-box Gene Family AT5G67530 47.651 3.39e-33 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02159 K09566 - gmx:100791082 779.245
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02159 03 42187595 42194717 Cca03g02159 03 42187595 42194717 ECH