Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02156 ATGACAAGCAGCCAAAATATGAAATATGATGGTCATGGCAGCTCATTTATCATTGACATAGCCACCACAGTTAATTACACCATCAACAAAGCCAAAAAAAGATGGCGTTTTGCTTATACAGCCATTTATTCTAGACGTGTGATGCTTGCCCTGGCCAAAGAAGTCATATCTAAAAGAAATACAAACTCCAATCCCTACTCTAAACTCTTCCAAACTCAGTCTTCCAATTCCACCAACACTATTGATATAATTGAGCCTCTGATTCCCCAACATGGAACCAATCATTACTCTTTGGTTCCTGATGTTGACAAGGCCAGACTTGCTAGTATGGTAAAGGACAAAAACTTGTTAGCCTTTAATGAGTTTGGAGGAGTTGAAGGTGTTGCCAATATTCTTGGAACCACTCCAGCAAAGGGAATCACTGGCAGTGATGATGACATCGCCCAAAGGCGTGATTTATTTGGTTCAAACACTTACCAGAGGCCACCTCCCAAGGTCTTCCTGAGCTTTGTGGTGGAAGCTTTCAATGACACCACTATTCTGATCCTTCTTGTTTGTGCTGGCCTTTCCCTTGGCTTTGGCATAAAAGAGCATGGACCAGGTGAAGGCTGGTACGAAGGGGGGAGTATATTTGTAGCAGTCTTTCTGGTAGTGGTTGTCACTGCACTCAGCAACTTCAGACAAGAGAGACAATTTGACAAATTGTCTAAGATAAGCAACGACATCAAAGTAGAAGTTGTGAGAAATGGAAGGCCGCAGCAGATATCCATCTTTGAAGTTCTTGTGGGGGATATTGTGTCCCTCAAGATTGGTGATCAAATTCCAGCTGATGGATTGTTCATGAGTGGCCATTCTTTGCATGTGGATGAATCAAGTATGACAGGTGAGAGCGACCACGTAGAAATTGAGCCCTTAAAAAGCCCCTTCTTGTTGTCTGGTGCAAAAGTTGTGGATGGTTTTGCTCAGATGCTTGTGACATCTGTCGGAACCAACACAGCATGGGGTGAAATGATGAGCTCAATATCACGAGACACCAACGAAAGGACACCATTACAGGCTCGCCTTGACAAGTTAACCTCTTCCATTGGAAAGGTAGGCCTCACAGTCGCTTTTTTTGTTCTCATAGTCTTGTTAATACGTTATTTCACCGGAAACACTCAAGACGATAAAGGGAATAAGGAGTTCCAGGGGAGTAAGACCGATATAAATGACGTTTTCAATGCGGTTGTGCGTATTGTTGCAGCTGCAGTCACTATTGTGGTTGTGGCAATCCCGGAGGGTCTGCCATTGGCTGTCACTCTTACACTAGCTTACTCCATGAAAAGAATGATGGCAGACCAAGCAATGGTTAGGAAACTTTCTGCTTGTGAAACCATGGGGTCAGCAACAGTTATTTGCACCGATAAAACTGGCACCTTAACTTTAAATCAAATGAGAGTCACCAAGTTTTGGCTTGGCCTAGAAAATGTTATGGAAAACTTTTCCAATGCAATGGCCTCTAATGTTCTTCAGTTATTCCACCAAGCAGTTGGCCTTAACACAACTGGCAGTGTCTATAAAGCTTCATCGACATCTGAACCTGAAATTTCTGGTAGTCCGACAGAGAAAGCTATACTCTTGTGGGCCGTATCTGATTTAGGCATGGACATGGATGAACTGAAGAGCACACATAAAGTTCTCCATGTTGAAACATTTAACTCAGAGAAGAAACGAAGTGGCATTGCGATAAAGAAGGAGACCAACAACACAGTTCACGTGCATTGGAAAGGTGCTGCAGAGATTATACTTGATATGTGTTCGAATTATATTGACAATAACGGCATAGAGAAGTCTCTTGATGAAGAACGGAGTAAACTTGAGAAGATAATACAAGGCATGGCTGCTTGTAGCCTACGATGTATCGCATTTGCTCACATGCAGATTTCAGAAGACATTGATTATAACGATAAGGAGAATGCACATCAAATCCTTAGAAAAAATGGCTTGACCTTGTTAGGCATTGTTGGCCTCAAGGATCCATGCCGACCCGACGTCAAGAAGGCTGTGGAAACTTGTAAACTTGCAGGAGTTAGTATCAAGATGATTACTGGAGATAACATATTCACTGCAAGGGCAATAGCAACAGAATGTGGAATATTAGACCTTGATGGCCACGTGAACCCGGGAGAAGTGGTGGAAGGTATGGAATTCAGGAACTACACGGAGGAAGTTAGAATGGAGAAAGTTGACAAGATCCGTGTGATGGCGAGATCATCCCCTTTGGACAAGCATTTGATGGTGCAATGCTTGAAAAAGAAAGGCCATGTTGTTGCAGTCACAGGAGATGGCACGAATGATGCACCTGCACTTAAAGAAGCTGATATTGGGCTTTCTATGGGGATCCAAGGAACTGAGGTTGCCAAGGAGAGTTCTGACATTGTCATCTTAGACGACAACTTCAATTCTGTTGCCACTGTATTAAGGTGGGGCCGATGTGTTTACAACAACATCCAGAAATTCATCCAGTTTCAACTAACCGTGAATGTTGCAGCTCTAGTGATCAATTTTATTGCAGCAGTTTCTTCGGGAGATGTTCCCCTAACAACAGTTCAACTATTATGGGTAAATCTCATTATGGATACTCTAGGAGCTTTGGCACTGGCCACAGAAAGGCCTACAAAGGAGTTAATGGAGAAAAAGCCAGTGGGTAGAACTGAGCCTCTTATTACTAGTATTATGTGGAGAAACCTTTTAGCTCAAGCTTTATATCAGATTGCTGTCCTCTTGGTTTTACAATTCAATGGAAAGTCAATCTTCAATGTAAATGAGGAGGTAAAGGATACTCTAATTTTTAATGCTTTTGTTCTCTGCCAAGTTTTCAACGAGTTCAACTCTAGAAGTATGGAGAAACTTAATGTATTCGAAGGCATTCTCAAAAACCACTTGTTTCTTGGAATTGTGGGCATTACTGTGGTTCTTCAAGTTGTGATGGTGGAACTCCTAAGGAAGTTTGCTGATACAGAGAGATTAACATGGGAGCAATGGGGAATTTGTATTGGAATTGCAGCTATGTCATGGCCAATTGCTTGGTTTACAAAGCGCCTACCTGTCTCAGATAAACCGTTCGCCAGCCACGTTAAGTGGGTCAAGGATAGAAACTACTATGATACGTTGAGCATCATGCTTAGCTAA 3171 0.4242 MTSSQNMKYDGHGSSFIIDIATTVNYTINKAKKRWRFAYTAIYSRRVMLALAKEVISKRNTNSNPYSKLFQTQSSNSTNTIDIIEPLIPQHGTNHYSLVPDVDKARLASMVKDKNLLAFNEFGGVEGVANILGTTPAKGITGSDDDIAQRRDLFGSNTYQRPPPKVFLSFVVEAFNDTTILILLVCAGLSLGFGIKEHGPGEGWYEGGSIFVAVFLVVVVTALSNFRQERQFDKLSKISNDIKVEVVRNGRPQQISIFEVLVGDIVSLKIGDQIPADGLFMSGHSLHVDESSMTGESDHVEIEPLKSPFLLSGAKVVDGFAQMLVTSVGTNTAWGEMMSSISRDTNERTPLQARLDKLTSSIGKVGLTVAFFVLIVLLIRYFTGNTQDDKGNKEFQGSKTDINDVFNAVVRIVAAAVTIVVVAIPEGLPLAVTLTLAYSMKRMMADQAMVRKLSACETMGSATVICTDKTGTLTLNQMRVTKFWLGLENVMENFSNAMASNVLQLFHQAVGLNTTGSVYKASSTSEPEISGSPTEKAILLWAVSDLGMDMDELKSTHKVLHVETFNSEKKRSGIAIKKETNNTVHVHWKGAAEIILDMCSNYIDNNGIEKSLDEERSKLEKIIQGMAACSLRCIAFAHMQISEDIDYNDKENAHQILRKNGLTLLGIVGLKDPCRPDVKKAVETCKLAGVSIKMITGDNIFTARAIATECGILDLDGHVNPGEVVEGMEFRNYTEEVRMEKVDKIRVMARSSPLDKHLMVQCLKKKGHVVAVTGDGTNDAPALKEADIGLSMGIQGTEVAKESSDIVILDDNFNSVATVLRWGRCVYNNIQKFIQFQLTVNVAALVINFIAAVSSGDVPLTTVQLLWVNLIMDTLGALALATERPTKELMEKKPVGRTEPLITSIMWRNLLAQALYQIAVLLVLQFNGKSIFNVNEEVKDTLIFNAFVLCQVFNEFNSRSMEKLNVFEGILKNHLFLGIVGITVVLQVVMVELLRKFADTERLTWEQWGICIGIAAMSWPIAWFTKRLPVSDKPFASHVKWVKDRNYYDTLSIMLS 1056
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02156 1056 TIGRFAM ATPase-IIB_Ca: calcium-translocating P-type ATPase, PMCA-type 112 1030 IPR006408 GO:0005388|GO:0005524|GO:0016020|GO:0070588
Cca03g02156 1056 Gene3D - 143 342 - -
Cca03g02156 1056 SUPERFAMILY Calcium ATPase, transduction domain A 242 340 IPR008250 -
Cca03g02156 1056 Gene3D - 476 673 IPR023299 GO:0000166
Cca03g02156 1056 SFLD Haloacid Dehalogenase 448 826 - -
Cca03g02156 1056 Pfam Cation transporting ATPase, C-terminus 858 1027 IPR006068 -
Cca03g02156 1056 PRINTS H+-transporting ATPase (proton pump) signature 619 637 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g02156 1056 PRINTS H+-transporting ATPase (proton pump) signature 805 830 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g02156 1056 PRINTS H+-transporting ATPase (proton pump) signature 773 789 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g02156 1056 SUPERFAMILY HAD-like 464 878 IPR036412 -
Cca03g02156 1056 Pfam haloacid dehalogenase-like hydrolase 464 787 - -
Cca03g02156 1056 Pfam E1-E2 ATPase 242 444 - -
Cca03g02156 1056 ProSitePatterns E1-E2 ATPases phosphorylation site. 468 474 IPR018303 -
Cca03g02156 1056 PANTHER CALCIUM-TRANSPORTING ATPASE 19 1017 - -
Cca03g02156 1056 Gene3D - 463 818 IPR023214 -
Cca03g02156 1056 PRINTS P-type cation-transporting ATPase superfamily signature 773 792 - -
Cca03g02156 1056 PRINTS P-type cation-transporting ATPase superfamily signature 466 480 - -
Cca03g02156 1056 PRINTS P-type cation-transporting ATPase superfamily signature 666 677 - -
Cca03g02156 1056 PRINTS P-type cation-transporting ATPase superfamily signature 797 809 - -
Cca03g02156 1056 PRINTS P-type cation-transporting ATPase superfamily signature 289 303 - -
Cca03g02156 1056 PRINTS P-type cation-transporting ATPase superfamily signature 688 698 - -
Cca03g02156 1056 SMART Cation_ATPase_N_a_2 121 195 IPR004014 -
Cca03g02156 1056 Pfam Cation transporter/ATPase, N-terminus 123 190 IPR004014 -
Cca03g02156 1056 SFLD p-type atpase 448 826 IPR044492 -
Cca03g02156 1056 SUPERFAMILY Calcium ATPase, transmembrane domain M 122 1030 IPR023298 -
Cca03g02156 1056 CDD P-type_ATPase_Ca_PMCA-like 147 906 - -
Cca03g02156 1056 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 473 670 IPR023299 GO:0000166
Cca03g02156 1056 Gene3D - 173 1019 - -
Cca03g02156 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 744 853 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g02156 1056 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 408 495 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Cca03g02156 1056 PANTHER CATION TRANSPORTING ATPASE 19 1017 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02156 Cca-Chr3 42162561 42166288 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02156 30 1040 Primary Pumps ATPases AT3G63380 68.768 0.0 1360
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02156 K01537 - gmx:100790034 1848.56