Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02154 ATGTTTCCCACGGCTATTTCCAATTCAACATCTTTGTCCGAGGATGCCAGTGTTTCTTCTGGGACAAAACTTCACGACCTTGGAGGACTCAATCAACAACAGCCTCAAAAGATCAAGAAAAAGAGAAGCCTCCCTGGAAATCCAGACCCGGATGCTGAAGTGATTGCGTTATCTCCGAAGACCCTTTTGGCCACTAATAGATTTGTTTGTGAGATCTGCCACAAGGGTTTCCAGAGAGATCAGAACCTGCAGCTTCATAGGAGGGGCCATAACCTCCCATGGAAGCTGAAGCAAAGGAGCAGCAAAGAGGTCAAAAAGAAAGCCTACGTTTGCCCTGAACCTTCGTGCGTTCACCACAACCCCTCAAGGGCACTGGGGGATCTCACAGGAATCAAGAAGCACTACTGCAGAAAGCATGGAGAGAAGAAGTGGAAATGTGAAAAGTGCTCAAAGATATATGCGGTTCAGTCAGATTGGAAAGCTCACTCAAAAACCTGTGGTACTAGAGAATATAGATGTGACTGTGGAACCCTTTTTTCCAGGAAGGACAGCTTCATAACTCATAGGGCATTCTGTGATGCATTGGCGGAAGAAAGTGCGAGAATATCAGCAAATCAATTAGCTGCAACTGCAAACACGACAAACCCATTCCAATCTCTCTATGTTTTCCAAAACCAGCAACTCAGCACTTTCAAGCAATGGGACTCATCTGAAGAAAACCCTAACCCTAGCAACATTGGCAGTGGCATCCACGTGAAGCCAGAATATCAAACTTTCCACAACCCCAACCCCTCAGCCTTCGGGAAACTCCACGTGGCGACGCAAGCACCCTCCTCCATCAACGCTGCCACGTCAGCATACATGTCAGCCACTGCGCTGCTTCAGAAGGCTGCAACCGTTGGAGCCGCTGGCATCACGGGCCCTGGCTCTGTTGGGCCACAGCGAGTAATGGGTCACGTGACCCATCTCGGCGAGTTCGAAACGCTGAGCCAACTCGACCCGGTGGTGCCGGATTACATGATGAGAGGGTTCCCCACTGGGAGCCTGAGGAGCGACCGTCTCACTAGGGACTTTCTGGGACTCGCTAACGGCGGCGCGGCTGACGTTAGCACAAACGTGAATGATATGCTGGCGTTCGCGGGGGGTGCAGAGTACCACCAAGCGCACCGCCACGTGCTTCTCAAGCCACAACAAGGCTCTGCCTTTGGTTTCCTTGGGACAACCACTGCCCCCGAGACGTGGGGGAATTATTGA 1254 0.5136 MFPTAISNSTSLSEDASVSSGTKLHDLGGLNQQQPQKIKKKRSLPGNPDPDAEVIALSPKTLLATNRFVCEICHKGFQRDQNLQLHRRGHNLPWKLKQRSSKEVKKKAYVCPEPSCVHHNPSRALGDLTGIKKHYCRKHGEKKWKCEKCSKIYAVQSDWKAHSKTCGTREYRCDCGTLFSRKDSFITHRAFCDALAEESARISANQLAATANTTNPFQSLYVFQNQQLSTFKQWDSSEENPNPSNIGSGIHVKPEYQTFHNPNPSAFGKLHVATQAPSSINAATSAYMSATALLQKAATVGAAGITGPGSVGPQRVMGHVTHLGEFETLSQLDPVVPDYMMRGFPTGSLRSDRLTRDFLGLANGGAADVSTNVNDMLAFAGGAEYHQAHRHVLLKPQQGSAFGFLGTTTAPETWGNY 417
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02154 417 MobiDBLite consensus disorder prediction 1 40 - -
Cca03g02154 417 MobiDBLite consensus disorder prediction 1 51 - -
Cca03g02154 417 PANTHER PROTEIN INDETERMINATE-DOMAIN 12 8 392 - -
Cca03g02154 417 ProSitePatterns Zinc finger C2H2 type domain signature. 70 90 IPR013087 -
Cca03g02154 417 Gene3D Classic Zinc Finger 64 91 - -
Cca03g02154 417 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 8 392 - -
Cca03g02154 417 Gene3D Classic Zinc Finger 101 192 - -
Cca03g02154 417 ProSiteProfiles Zinc finger C2H2 type domain profile. 68 90 IPR013087 -
Cca03g02154 417 SUPERFAMILY beta-beta-alpha zinc fingers 67 164 IPR036236 -
Cca03g02154 417 SMART c2h2final6 68 90 IPR013087 -
Cca03g02154 417 SMART c2h2final6 144 164 IPR013087 -
Cca03g02154 417 SMART c2h2final6 109 139 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02154 Cca-Chr3 42103676 42107965 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02154 34 385 IDZ Gene Family AT4G02670 54.743 2.56e-127 372
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Cca03g02154 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02154 K25870 - gmx:100788975 648.662
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02154 03 42103676 42107965 Cca02g01474 02 33346677 33350826 PCT
Cca02g01100 02 28183583 28187414 Cca03g02154 03 42103676 42107965 PCT