Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02153 ATGAACTATTTGTACCCGGTGAAAGAAGAGTATTTGGAATCGTCACCACCATCGTCTTTATCACTATCAACTCACGGAATAGTTGATGAGTCAGGGATggctcctgctccgaggccaatggaggggcttcacgaaatagggccacccccgtttcttaccaagactttcgatgcagtggaggaccccaccactagtcacatagtttcatggagcagaggaggtgcaagctttgtggtttgggatccacacgctttctccagagaccttcttccaagatacttcaagcacaataatttctcaagctttgttaggcaactaaacacttacGGTTTTAGGAAAATTGATCCAGATAAGTGGGAGTTTGCAAATGAAGGGTTTCTTAGAGGGCATAGACACTTGTTGGCAAACATAAGGAGAAGGAAGCATCCTTCCCAGCCTTGTCCCTCTCAACAAGCACAAGGTCACTGTGTTGAAGTTGGTCGTTTTGGCCTAGATGAAGAGGTTGATCGTTTGAAGCGTGACAAACAGGTTTTGATGTTGGAGCTTGTGAGGCTTAGACAGCAGCAACAGAACACAAAGTCGTACCTTGAGGCAATGGAGAAGAGGCTAAGAGGGACAGAAATTAAGCAGCAACAAATGATGGCTTTTTTGGCTAGAGCCTTGAAGAACCCCACTTTCATTCAGCAGCTACTTCAGCAGAAGGAGAAGAGGAAGGAGCTTGAAGAGGCCATGTCAAAGAAGAGGAGAAGGCCAATTGAGCAAGGGCATAGTGGGGTTGGAGAATCAAGCAGAGGGGAATTAGGAAGGGCTAGTGTGAAAGCCGAGTCACTAGTGTTTGGAGAATATGGATTTGAAGTGTCAGAGTTGGAATTGCTTGCTATGGAGATGCAAGGCTATGGTAGGGGGAGGAGGGAGCAAGAGGAGGAGCCTGAGGTATTCGAGTCACAAGAGAGGCTTGAGAAAGAGCTTGATGAAGGGTTTTGGGAAGAATTTTTCAGTGAGGGTTTTGAGGGTGAATTTGATATCCCACAAGGCCAAGATGAAGAAGATGTCAATGTGTTGGCCAATCGCTTTGGTTACTTGGGTTCAAGTCCTAAATGA 1101 0.3597 MNYLYPVKEEYLESSPPSSLSLSTHGIVDESGMAPAPRPMEGLHEIGPPPFLTKTFDAVEDPTTSHIVSWSRGGASFVVWDPHAFSRDLLPRYFKHNNFSSFVRQLNTYGFRKIDPDKWEFANEGFLRGHRHLLANIRRRKHPSQPCPSQQAQGHCVEVGRFGLDEEVDRLKRDKQVLMLELVRLRQQQQNTKSYLEAMEKRLRGTEIKQQQMMAFLARALKNPTFIQQLLQQKEKRKELEEAMSKKRRRPIEQGHSGVGESSRGELGRASVKAESLVFGEYGFEVSELELLAMEMQGYGRGRREQEEEPEVFESQERLEKELDEGFWEEFFSEGFEGEFDIPQGQDEEDVNVLANRFGYLGSSPK 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02153 366 ProSitePatterns HSF-type DNA-binding domain signature. 90 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g02153 366 Gene3D - 44 141 IPR036388 -
Cca03g02153 366 Coils Coil 230 250 - -
Cca03g02153 366 Coils Coil 168 202 - -
Cca03g02153 366 SMART hsfneu3 47 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g02153 366 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 30 354 IPR027725 -
Cca03g02153 366 PRINTS Heat shock factor (HSF) domain signature 51 74 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g02153 366 PRINTS Heat shock factor (HSF) domain signature 89 101 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g02153 366 PRINTS Heat shock factor (HSF) domain signature 102 114 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g02153 366 MobiDBLite consensus disorder prediction 238 255 - -
Cca03g02153 366 Pfam HSF-type DNA-binding 51 140 IPR000232 GO:0003700|GO:0006355|GO:0043565
Cca03g02153 366 PANTHER HEAT STRESS TRANSCRIPTION FACTOR A-6B 30 354 - -
Cca03g02153 366 MobiDBLite consensus disorder prediction 238 266 - -
Cca03g02153 366 SUPERFAMILY "Winged helix" DNA-binding domain 47 140 IPR036390 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02153 Cca-Chr3 42089669 42093617 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02153 28 364 HSF AT3G22830 54.891 1.46e-129 375
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Cca03g02153 HSF_DNA-bind 7.7e-32 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02153 K09419 - gmx:100794264 557.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02153 03 42089669 42093617 Cca02g01101 02 28198879 28201433 PCT