Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02149 ATGATTAAGAGTGGGCTTCTCAGTGCCCACTTCTCAAAACTGCAATCCAAATTGCGTTTTCAATTTCATAAATTCAGATCTTGTTCTGCAAGAGTCGGACTAACTGTGTCAGGAACACAGCTCTATCGTTGCCGTTGGAGTGGGAGGCACAAGCATGAAAAGAAAAAGTATGTCCTTAAAAAGATTCGCCTTGCTCGCCAAACGGACAGAACCCGTAGGTCTGCCCACCAGGAGATGGAGCTTATATCTAAAGTTCGTAATCCATTTATTGTGGAGTATAAAGATTCCTGGGTAGAAAAGGGTTGTTTTGTATGTATCATCATTGGCTATTGTGAAGGAGGGGATATGGCCGAAGCTATAAAAAAGGCTAATGGTGTTAACTTTCCTGAAGAGAAACTTTGTAAGTGGCTTGTTCAATTGCTGATGGCACTTGATTACTTGCATGGAAATCATATTCTGCACCGTGACGTCAAGTGTTCAAATATATTCTTGACAAAAGATCAAGATATACGGCTAGGTGACTTTGGTCTTGCTAAAATGTTGACTTCTGATGATCTTGCTTCCTCAGTTGTTGGGACTCCAAGTTATATGTGCCCAGAGCTTCTTGCTGATATACCTTATGGCTCTAAGTCAGATATCTGGTCTTTGGGATGCTGTATCTATGAAATGGCTTCTCACAAGCCAGCTTTTAAAGCTTTTGACATACAATCATTGATTATCAAAATAAACAAGTGTATAGTAGCTCCCCTGCCAACCATGTATTCTGCTGCTTTTCGAGGTCTTGTTAAAAGTATGCTGCGGAAAAATCCAGAGCTAAGGCCAACTGCTGCAGAATTACTAAATCATCCGCATCTTCAGCCTTACATTCATAAAATTCACCTAAAATTAAATAGCCCCAGAAGTACTTTTCCATTCCAATGGCCCGAGTCAAATTATGTAAGGAGAACTCGGTTCGTAGAGCCAGAATCTGTTTCTACTCTTTCTGACCAAGATAAATGCTTGTCATTTAACCATGACAGGACCTTGAATCCTAGTATTTCGGAAACTGAACAAGTTTCTCATTGTTCTACTCAAAGAGCACATGGATTATCCACTTTTTCAGAAGAGAAACTCTATGAACTATCTGTTGGTTTTGTCCGTGACAAATGCAATACTGACAAATCAAAAGCCACAAAATTCCCAACTGTTGAAAGAACACCAAAACTGAAAGCAGTTAAAGATTCTGCCACTGGCAAAAGGCAAACAGTGGCACCATCAAAGACAACCCACACTGGTTCAAAGCGTGATTCTCTTCCAGTGTCTCACGCACCATCTAGAAAGTTTTCCACACCACCAAGAGCCAGGGCCACAGCAAACTTGTACACCAAAGTTGGCATCCTTCGAAGTGTGGACTCTCTTGATGTTTCTGTTAATGAACCACGAATTGACAAGATTGCAGAATTTCCAATGGCTTTCTGTGAGAATCCTTTTTTCCCTGTCCGTGCACCATCATCAACATCAGCTCGCTGCTCTTCTAGCTCAGCAGGGAGCACTGCTGATATCTCCATCACAAAGGACAAGTGCACAATCCAGGAGGACAAAGTTACTGTCCCCAGACTCCCCACCAATATTGGTGATGCATGCCCTGGTCCAAAGGGCACTGAATGCTCTTCTGAGCATGTAAAAGCTTGTGTTTCTGCCGAGTTGGATCAGCGCCGGTTTGACACTTCATCGTTCCAGCAGCGTGCAGAGGCATTGGAAGGGTTGCTGGAGTTCAGTGCCAGGCTCCTTAAACAACAGAGGTTTGAAGAGCTTGGGGTGTTGCTGAAGCCATTCGGGCCTGAGAAGGTTTCTCCAAGGGAAACAGCTATTTGGTTGACCAAGAGCTTTAAGGAAACTGTGGTCTAA 1887 0.4298 MIKSGLLSAHFSKLQSKLRFQFHKFRSCSARVGLTVSGTQLYRCRWSGRHKHEKKKYVLKKIRLARQTDRTRRSAHQEMELISKVRNPFIVEYKDSWVEKGCFVCIIIGYCEGGDMAEAIKKANGVNFPEEKLCKWLVQLLMALDYLHGNHILHRDVKCSNIFLTKDQDIRLGDFGLAKMLTSDDLASSVVGTPSYMCPELLADIPYGSKSDIWSLGCCIYEMASHKPAFKAFDIQSLIIKINKCIVAPLPTMYSAAFRGLVKSMLRKNPELRPTAAELLNHPHLQPYIHKIHLKLNSPRSTFPFQWPESNYVRRTRFVEPESVSTLSDQDKCLSFNHDRTLNPSISETEQVSHCSTQRAHGLSTFSEEKLYELSVGFVRDKCNTDKSKATKFPTVERTPKLKAVKDSATGKRQTVAPSKTTHTGSKRDSLPVSHAPSRKFSTPPRARATANLYTKVGILRSVDSLDVSVNEPRIDKIAEFPMAFCENPFFPVRAPSSTSARCSSSSAGSTADISITKDKCTIQEDKVTVPRLPTNIGDACPGPKGTECSSEHVKACVSAELDQRRFDTSSFQQRAEALEGLLEFSARLLKQQRFEELGVLLKPFGPEKVSPRETAIWLTKSFKETVV 628
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02149 628 Gene3D Phosphorylase Kinase; domain 1 11 110 - -
Cca03g02149 628 Gene3D Transferase(Phosphotransferase) domain 1 113 340 - -
Cca03g02149 628 PANTHER SERINE/THREONINE-KINASE NEK4 44 617 - -
Cca03g02149 628 ProSiteProfiles Protein kinase domain profile. 1 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02149 628 ProSitePatterns Serine/Threonine protein kinases active-site signature. 152 164 IPR008271 GO:0004672|GO:0006468
Cca03g02149 628 PANTHER SERINE/THREONINE-PROTEIN KINASE NEK 44 617 - -
Cca03g02149 628 SUPERFAMILY Protein kinase-like (PK-like) 47 348 IPR011009 -
Cca03g02149 628 Pfam Protein kinase domain 48 284 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02149 628 MobiDBLite consensus disorder prediction 405 445 - -
Cca03g02149 628 CDD STKc_Nek 49 285 - -
Cca03g02149 628 SMART serkin_6 42 285 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02149 628 MobiDBLite consensus disorder prediction 412 431 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02149 Cca-Chr3 42038475 42047568 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02149 38 315 MAP Kinase Kinase Kinase AT1G53570 28.188 1.24e-35 139
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK NEK Cca03g02149 Pkinase 1.3e-57 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02149 K08857 - gmx:100792678 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02149 03 42038475 42047568 Cca03g02149 03 42038475 42047568 ECH