Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02131 ATGGATGTAACAGATGACAAAAAGAGAACGACAATAGAGGAATCAGATGAGGGATGTGGTGGGAGTTCAAGAGATATAAGGGAAAAATGTCCGTGCGGTATTGAAGTGGATCTTAGTAATTATGATATGTTAAACATGGGAGAGGGCTCTAGTGGGATGGTGGTTGATTTGGCTGAAGGGAATGTCAGTAACTTCAATGAACGAAACCAGTCGGTAAGTGGTCAGCATGGAGAATCACACCCTCAAAACAATCCCTACAAAGACAGGATTCTAGGGCTTGAACTAATAGCCCGATTTCAACGCCGCAAAAGGGGTTTTAGGCGTTTAACTCAGATACACGGTGTGAGCATGTTGAATGAAACCGAAGATATATGCCCAAGGAGGTCCTTGAAAAAAGAGATAATAGAAGAATTGGTCGGAAATTCTCAGCCGAAGGAGAATAAAGCTGAGAAAGTTGTGATCAATGAGGAAGTGATTCCTGTGGAAAGAGAAGCACGTATACCTGATACTGTGAATGCAAATGTTGAAAAGGAGCAAAGTTATAGTGCAAGAACGATCAGGGCTCGTCGTAGAGAACAACAGAAGCAAGAAAAAACAACTGTGCTTTCCTGGATGGTTGACAGGAAAGTAATCAAACCACGTGAGAGGGTTTTTTATATGGATCACGAAAGGAAATGTGTATTACTGAGTGGTGAAATTGATGGAGGTGAAATCTGGTGTGAGTGCTGTTCTAAATCTGTGTCGATTTCGGAGTTTGAAGCTCATTCAAAAAGCAAAATCTGTGATCCGCTGAAGAATATATGTGTGAAGGGAGGACTTTCTCTCTTGCAATGCCTGACACAAGCATGGAACATGCAAGATGAATATGCTTGTAATTTTTATCATTTCTTTAGTGGTGTTGATGGTGACCAAAGGGATGATATTTGCGGTATCTGCGGAGACGAAGGTGAACAACAAATCTGTTGCGACGGTTGCTCTTCAGTGTTCCATCAAACCTGCTTGGGATTAGAAAGAGTTCAATCTGGTGTCTGGTACTGTATGTATTGTCGTTGCAAATTTTGTGGGCTGTACGGTGAAAAGCAAAAGGACAGTTCTGGAGGTTTTGTTCAGTCTTTGATGTCTGCATGTCGTACATGCGGGGAAAAATATCATAAATCCTGTCTCGAGGCAAGTGGCGCCAACCCTGATCATTCTAAACTAGAATTATTATGTGGAAACGAATGTAAAGTGGTATATGAGAGACTTGAAAACATGCTTGGGAAAAAATATGCAATAGAAGATGGATTTACTTGGTCATTGATTCGTCGGTCAGATGTTGACTCTAACACCTCCCAAGTAGAACCGGGAAAGGTTGAATCTAATTGCAAACTAGGTGTTGCATATTCGGTATTGAAAGACTGCTTCTCGGTACACACAGATGAGATAAGCGGGGTTAATATGATGCGCAGTATTCTATATAATTGTGGGTCAAACTTCCCTCGCGTGAATTTTGAGAGATTTTTTACTGCAATTCTAGAGAAAGGTGATGAGATTATCAGTGTTGCAACTATCAGGATCCACGGGAACCAAGTAGCAGAGATGTCATACGTTGGGACCCTCTCACTTCATAGGAAAAAAGGAATGTTCAGCCGACTTATGAAAGGCATTGTATCGGCACTCAGTTTTTTGAATGTTGAGTTATTGATCATATCATCCATGTTACAAGTCAAGAACACTTGGATTCGTTCTTTTGGGTTTGAGCCCCTGGATTTGAGAAGCAAGAAACTAATAAAGAGCATGAATTTGATGGTATTTCCTGGCACAGTAACTCTACAGAAAAAGATACCAAAGCAGTAA 1836 0.4096 MDVTDDKKRTTIEESDEGCGGSSRDIREKCPCGIEVDLSNYDMLNMGEGSSGMVVDLAEGNVSNFNERNQSVSGQHGESHPQNNPYKDRILGLELIARFQRRKRGFRRLTQIHGVSMLNETEDICPRRSLKKEIIEELVGNSQPKENKAEKVVINEEVIPVEREARIPDTVNANVEKEQSYSARTIRARRREQQKQEKTTVLSWMVDRKVIKPRERVFYMDHERKCVLLSGEIDGGEIWCECCSKSVSISEFEAHSKSKICDPLKNICVKGGLSLLQCLTQAWNMQDEYACNFYHFFSGVDGDQRDDICGICGDEGEQQICCDGCSSVFHQTCLGLERVQSGVWYCMYCRCKFCGLYGEKQKDSSGGFVQSLMSACRTCGEKYHKSCLEASGANPDHSKLELLCGNECKVVYERLENMLGKKYAIEDGFTWSLIRRSDVDSNTSQVEPGKVESNCKLGVAYSVLKDCFSVHTDEISGVNMMRSILYNCGSNFPRVNFERFFTAILEKGDEIISVATIRIHGNQVAEMSYVGTLSLHRKKGMFSRLMKGIVSALSFLNVELLIISSMLQVKNTWIRSFGFEPLDLRSKKLIKSMNLMVFPGTVTLQKKIPKQ 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02131 611 MobiDBLite consensus disorder prediction 1 24 - -
Cca03g02131 611 SMART PHD_3 353 409 IPR001965 -
Cca03g02131 611 SMART PHD_3 308 350 IPR001965 -
Cca03g02131 611 Pfam Tify domain binding domain 231 281 IPR032308 -
Cca03g02131 611 SUPERFAMILY FYVE/PHD zinc finger 304 357 IPR011011 -
Cca03g02131 611 ProSitePatterns Zinc finger PHD-type signature. 309 349 IPR019786 -
Cca03g02131 611 MobiDBLite consensus disorder prediction 67 81 - -
Cca03g02131 611 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 299 373 IPR013083 -
Cca03g02131 611 ProSiteProfiles Zinc finger PHD-type profile. 306 352 IPR019787 -
Cca03g02131 611 MobiDBLite consensus disorder prediction 67 86 - -
Cca03g02131 611 SUPERFAMILY Acyl-CoA N-acyltransferases (Nat) 495 585 IPR016181 -
Cca03g02131 611 PANTHER PHD FINGER PROTEIN 12 94 611 IPR042163 GO:0003714|GO:0045892
Cca03g02131 611 PANTHER FINGER PROTEIN, PUTATIVE-RELATED 94 611 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02131 Cca-Chr3 41850813 41857701 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02131 198 608 PHD Transcription Factor Family AT1G05380 43.961 6.93e-109 351
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02131 - - ccaj:109798030 1233.78
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02131 03 41850813 41857701 Cca03g02131 03 41850813 41857701 ECH
Cca03g02131 03 41850813 41857701 Cca02g01129 02 28578483 28586223 PCT