Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02114 ATGGAAAACCGTCACCCCGCCGCGGCAAAGCGAAACCTAAAGCGCAAGCTCGAACGGGAAGATCAAACGTGTTCTAAGGCCCGGCACTTCGCTTCTCAACAACGCCACCCGAATATTTCTGTGACGATTCGTGAACACGTTTCTCTCCTCAGTTGCGTTCCCTTACCCTCTCCCTCTGCGTTTGATTGTGCATTGATTAAAGATTCTGTCACCATTCTCTCTGAACTCGCTGAGAACGAGCGTCTGGTGAAAACGATAGTGAATTGTGGCGCCGTTCCTGCTCTGGTCCGGCATCTTCAAGTGCCGGATGCATGGAAAGATGAAGGAGACAATGTGTGCTACCATTTTGAGGTGGCGAAACAATGTGCGCTCGTGCTCGAGCTTCTTGCAACTGAGACAGAATATCAGCAACATATTATAGAAGCTGGAGCCTTGCCATGTCTTGTAGATTTGTTAAGGAGGCACAAGATCAGTGCCATTTGTCAACCACTTATTGATCTTCTAAGGAGAGTAGCAGGTGCAATAACCAGCCTTGCACATGAAAATAATGGCATCAAGGCCCTTGTCAGGATGGAAGGAGGAATACCTCCTCTTGTTGAATTGCTTGAATTCAATGACATAAAGGTACAGAGAGCAGCTGCACGGGCCTTGCGAACTATTGCTTTTAATAATGATGGCAATAAAAATCAGATTGTTCAATGCAATGCATTACCCACTCTTGTACTAATGCTTCAATCAGAGGATCTTAAAATACGTTCTGAGGCGGTTGGTGTCATTGGAAATCTTGTCCACTCTTCACCAAGTATTAAGAAAGAAGTTCTTCTTGCTGGTGCTTTGCAACCTGTTATTTGTTCACTTAGTTCCTCTTGTCCGGATAGCCAAAGAGAAGCAGCCCTTTTACTTGGACAGTTTGCCACAGCAGATTCAGATTGCAAGGTCCATATTGCCCAAAGAGGTGCTATTCCACCATTAGTTAGCATGCTTAAGTCTCCAGATGCTGAGCTTCGGGAAATGTCATCTTTTGCACTTGGGAGGTTGGCACAGGACTCGCATAATCAAGCTGGTATTGCTCATAATGGAGGTATAGAGCCCCTGCTCAAACTTCTTGGTTCAAGTAATGTGCCCCTCCAACATAATGCTGCTTTTGCTCTATATGGTCTTGCTGATAACGAGGACATCGTTGTAGATATTATCAAGGCTGGTGCTCTTCAAAAACTGAAGACTGGATTATTCAAAGCTCAACAAACTAAAGAGTGTGTGGCGAAGACGTTAATCAGATTACAGGAGAAGACGTATGGGCGAGTATTGAAACACCTGATACATCTTATGCGCTTTGCGGAAGAAGCTGTTCAAAGACTTGTAGCTATTGCCCTTGCTTATTTATGTTCTCCTCATGACCTTAAAACTATATTCATTGACAATAATGGTTTGACATTGCTACTGGATATTCTTAAATCCTCAAACGTAGAGCAGAAGGCTGAAGCTTCGGTGGCTCTCCACAAATTGGCTGACAAAGCCAGTTCTTCTGTTTCTCATTTTGACGCTGCTCCTCCACCAACTCCCCAGATGTACTTGGGCGAGGAATTTGTAAACAATCCTAAACTTTCTGATGTCACATTCCTGGTTGAAGGCAAAAGTTTTTATGCTCATAGAGGCTGTTTGCTTTCTTCAGATATATTTCGTGCAATGTTTGATGGCGGATATAGGGAAACGAAAGAGAGACATATAGTTATTCCGAATATTAAATGGGATGTCTTTGAATCGATGATGAGGTTTTTATACACAGGAACAGTTGATGTCAATTTGGATATTGCTCAGGACCTCCTCAAAGCTGCAGATCAGTATCTACTGGACGGTCTTAAGCGTATTTGTGAATATGCTATTGCTCAGGAACTTTCTGAGGAAAATGTTTCAGCACTGTACAATATGTCAGATGATTTCAATGCTACTGCATTAAAACATTCATGTATACTGTTTATGCTGGAAAAATACGATGATCTGAGCTCCAAACCATGGTATTGTCCCCTGGTTCGTTGCATTATACCAGACATACACAAGTTCTTCTCGACTTTACTTGTCAAGTCTCATCCAGCTGGCTTGTGA 2103 0.4308 MENRHPAAAKRNLKRKLEREDQTCSKARHFASQQRHPNISVTIREHVSLLSCVPLPSPSAFDCALIKDSVTILSELAENERLVKTIVNCGAVPALVRHLQVPDAWKDEGDNVCYHFEVAKQCALVLELLATETEYQQHIIEAGALPCLVDLLRRHKISAICQPLIDLLRRVAGAITSLAHENNGIKALVRMEGGIPPLVELLEFNDIKVQRAAARALRTIAFNNDGNKNQIVQCNALPTLVLMLQSEDLKIRSEAVGVIGNLVHSSPSIKKEVLLAGALQPVICSLSSSCPDSQREAALLLGQFATADSDCKVHIAQRGAIPPLVSMLKSPDAELREMSSFALGRLAQDSHNQAGIAHNGGIEPLLKLLGSSNVPLQHNAAFALYGLADNEDIVVDIIKAGALQKLKTGLFKAQQTKECVAKTLIRLQEKTYGRVLKHLIHLMRFAEEAVQRLVAIALAYLCSPHDLKTIFIDNNGLTLLLDILKSSNVEQKAEASVALHKLADKASSSVSHFDAAPPPTPQMYLGEEFVNNPKLSDVTFLVEGKSFYAHRGCLLSSDIFRAMFDGGYRETKERHIVIPNIKWDVFESMMRFLYTGTVDVNLDIAQDLLKAADQYLLDGLKRICEYAIAQELSEENVSALYNMSDDFNATALKHSCILFMLEKYDDLSSKPWYCPLVRCIIPDIHKFFSTLLVKSHPAGL 700
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02114 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 143 193 IPR000225 GO:0005515
Cca03g02114 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 319 361 IPR000225 GO:0005515
Cca03g02114 700 SUPERFAMILY ARM repeat 167 508 IPR016024 -
Cca03g02114 700 Gene3D - 274 514 IPR011989 -
Cca03g02114 700 SMART arm_5 223 264 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 464 504 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 182 222 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 79 131 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 349 389 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 266 306 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 422 463 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 308 348 IPR000225 GO:0005515
Cca03g02114 700 SMART arm_5 132 180 IPR000225 GO:0005515
Cca03g02114 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 90 144 IPR000225 GO:0005515
Cca03g02114 700 ProSiteProfiles BTB domain profile. 536 602 IPR000210 GO:0005515
Cca03g02114 700 Gene3D - 3 164 IPR011989 -
Cca03g02114 700 SMART BTB_4 536 632 IPR000210 GO:0005515
Cca03g02114 700 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 1 698 - -
Cca03g02114 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 193 228 IPR000225 GO:0005515
Cca03g02114 700 Gene3D Potassium Channel Kv1.1; Chain A 515 661 IPR011333 -
Cca03g02114 700 SUPERFAMILY ARM repeat 65 155 IPR016024 -
Cca03g02114 700 SUPERFAMILY POZ domain 526 629 IPR011333 -
Cca03g02114 700 Pfam BTB/POZ domain 528 630 IPR000210 GO:0005515
Cca03g02114 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 360 402 IPR000225 GO:0005515
Cca03g02114 700 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 1 698 IPR044282 -
Cca03g02114 700 Pfam Armadillo/beta-catenin-like repeat 308 346 IPR000225 GO:0005515
Cca03g02114 700 Pfam Armadillo/beta-catenin-like repeat 224 263 IPR000225 GO:0005515
Cca03g02114 700 Pfam Armadillo/beta-catenin-like repeat 182 221 IPR000225 GO:0005515
Cca03g02114 700 Gene3D - 165 273 IPR011989 -
Cca03g02114 700 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 235 277 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02114 Cca-Chr3 41462243 41471037 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02114 279 541 U-box Gene Family AT1G23030 21.329 8.12e-08 53.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g02114 BTB 6.7e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02114 - - gmx:100783124 993.801