Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02112 ATGGAAATTCGTCTCCCTGCCGCCAAGCACAATGTCGAACAAGACTTAGCTGAAGACCAAACTCCCCAACAATGTGACCCAATTTTTTCTGCTATGATTCTACAACAAGTTTCTCTCCTCAATTCTGCACTCTCACTCTCTGCCTCGGATTGTGCCAATGTTAAGAGCGCCGTTTTCGTCCTTTCCAAACTCGCCAAAAAGAAGGACCTAGTGGTTGTGGATACTATAGTGAACAGAAGCGCTGTCCCTGCTCTGGTGAGGCATCTTCAAGTGCCAGATGCTGTGAAAGATGATGTTGGTGGTGTTACCGAATATTACTGGCTTGAGATGGCGAAAGGATGTGCATTCATCCTTGGGCTTCTTGCCATTCAACCAACGCATCAGCAACTAATTATAGAAGCTGGAGCCTTGCCCTGTCTTATAGATTTGTTAAGGAGGCACAAGATCAGTACCATTTCTCAACTGCTCAGTGATGTTTTAAAGAGAGTAGCTGATGCTATAACGAGCCTTGCCCTTCGAAATTCTGGCATTAAGACCCTTGTCAGGATGGAAGGTGGTATTGCTCCTCTTGTTGAATTGCTTGAATTCAATGACACAGAGGTACAGAGAGCAGCTGCTGGGGCCTTGCGAACTCTTGCATTTAATAATGATAACAATAAAAATCAGATGGTTGAATGCAATGCATTACCCGCTCTTGTACTAATGCTTCAATCAGAGGATCGTAAAATACATAACGAGGCAGTAAGTGTGATTGGAAATCTGGTCCACTCTTCACCAAATATTAAGAAACATGTTCTTCTAGCTGGGGCTTTACAACCTATTATTCGATTACTTAGTTCCTGCTGTTCAAAGAGCCAAAGAGAAGCAGCCCTTTTACTTGGTCAGTTTGCTTCAGCAGATTCAGATTGCAAGGTTCATATTGCCCAAAGAGGGGCTATTCCGCCATTAGTTGACTTGCTTAAGTCTCCATATGCAAAAGTTCAGGAAATGTCAGCTTTTGCACTTGGGAGGTTGGCACAGGACTCACATAATCAAGTTGGTATTGCTCATAATGGAGGTATAGAGGCTCTGCTCAATCTTCTCTCAGATAGCGCACGCCTCCAACATGTTGCTGCTTTTGCTCTCTATACTCTTGCTGTTAATGAGGATATCGTTGCAGATATTATCAAGGCTGGTGGTTTTCAAAAGCTGAAGGCTGGAATTTTCAAAGTTCACTCTACTAGAGGGTTTGTAGCAAAGACATTAAAAAGATTGGAGAAGACACAAGGCCGAGTATTGAAACACCTAATATATCTTATGCGCTTTGCGGAAAAATGGGTTCAAAGAAATGTAGCTTTTGCTCTTGCTTATTTATGCGGTCCTCATGATCGTAAAACTATATTCATTGACAATAATGGATTGGAATTACTGCTGGGTCTTCTTGAATCTCCGGATGTAAAGCAGAAGGGTGAGGCTTCAGCGGCACTTCACAACTTGGCTGTCAAAGCCAGCTTTTCTGCCTATCTTTTTGACACTTATCCTCCATCACCAACTCCCCAGATGTACTGGGGCGCGGAATATGTAAACAATCCTAATCTTTCTAATGTCACATTCCTGGTTGAAGGTAGATGCTTTTATGCTCATAGAGATTGTTTACTTTCTTCTGATATATTTCGTGCAATGCTTGATGGCAGTTATAGGGAAAGTCAAGCCAAACAAATAGTGATTCCGAACATCAAATGGGATGTCTTTGAATTGCTGATGAGGTTTTTATACACTGGAAAAGTAGATGTCTGTTTTGATATTGCTCAGGACCTCCTCGGAGCTGCAGATCAGTATCTACTGGGCGGTCTTAAGCGAATTTGTGAACGTGCTATTGTTAAGGGTATTTCTGTGGAAAATGTTTCAATACTGTACAACATGTCAGAGGCTTTCAATGCAACTGCAATAAAGCGTGCATGCATGCTGTTTATCCTGAAGAAATTTCATAATCTGAGATACAAACCATGGTATTGTCCTCTGGTTGATCGTATGATACCTGAAATACGTATGTATTTCTCAACTGTACTTGTCAAGTGTCATCCAGCTGACTCGAGGAACCATAGATTTTAA 2091 0.4189 MEIRLPAAKHNVEQDLAEDQTPQQCDPIFSAMILQQVSLLNSALSLSASDCANVKSAVFVLSKLAKKKDLVVVDTIVNRSAVPALVRHLQVPDAVKDDVGGVTEYYWLEMAKGCAFILGLLAIQPTHQQLIIEAGALPCLIDLLRRHKISTISQLLSDVLKRVADAITSLALRNSGIKTLVRMEGGIAPLVELLEFNDTEVQRAAAGALRTLAFNNDNNKNQMVECNALPALVLMLQSEDRKIHNEAVSVIGNLVHSSPNIKKHVLLAGALQPIIRLLSSCCSKSQREAALLLGQFASADSDCKVHIAQRGAIPPLVDLLKSPYAKVQEMSAFALGRLAQDSHNQVGIAHNGGIEALLNLLSDSARLQHVAAFALYTLAVNEDIVADIIKAGGFQKLKAGIFKVHSTRGFVAKTLKRLEKTQGRVLKHLIYLMRFAEKWVQRNVAFALAYLCGPHDRKTIFIDNNGLELLLGLLESPDVKQKGEASAALHNLAVKASFSAYLFDTYPPSPTPQMYWGAEYVNNPNLSNVTFLVEGRCFYAHRDCLLSSDIFRAMLDGSYRESQAKQIVIPNIKWDVFELLMRFLYTGKVDVCFDIAQDLLGAADQYLLGGLKRICERAIVKGISVENVSILYNMSEAFNATAIKRACMLFILKKFHNLRYKPWYCPLVDRMIPEIRMYFSTVLVKCHPADSRNHRF 696
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02112 696 Pfam BTB/POZ domain 521 620 IPR000210 GO:0005515
Cca03g02112 696 Pfam Armadillo/beta-catenin-like repeat 216 255 IPR000225 GO:0005515
Cca03g02112 696 Pfam Armadillo/beta-catenin-like repeat 300 339 IPR000225 GO:0005515
Cca03g02112 696 Pfam Armadillo/beta-catenin-like repeat 175 213 IPR000225 GO:0005515
Cca03g02112 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 352 393 IPR000225 GO:0005515
Cca03g02112 696 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 8 691 IPR044282 -
Cca03g02112 696 SUPERFAMILY ARM repeat 15 400 IPR016024 -
Cca03g02112 696 Gene3D - 33 152 IPR011989 -
Cca03g02112 696 ProSiteProfiles BTB domain profile. 527 593 IPR000210 GO:0005515
Cca03g02112 696 SUPERFAMILY POZ domain 518 621 IPR011333 -
Cca03g02112 696 SMART arm_5 341 380 IPR000225 GO:0005515
Cca03g02112 696 SMART arm_5 454 494 IPR000225 GO:0005515
Cca03g02112 696 SMART arm_5 258 298 IPR000225 GO:0005515
Cca03g02112 696 SMART arm_5 174 214 IPR000225 GO:0005515
Cca03g02112 696 SMART arm_5 300 340 IPR000225 GO:0005515
Cca03g02112 696 SMART arm_5 215 256 IPR000225 GO:0005515
Cca03g02112 696 SMART arm_5 124 172 IPR000225 GO:0005515
Cca03g02112 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 135 185 IPR000225 GO:0005515
Cca03g02112 696 PANTHER ARM REPEAT PROTEIN INTERACTING WITH ABF2 PROTEIN 8 691 - -
Cca03g02112 696 Gene3D Potassium Channel Kv1.1; Chain A 514 653 IPR011333 -
Cca03g02112 696 SMART BTB_4 527 623 IPR000210 GO:0005515
Cca03g02112 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 185 220 IPR000225 GO:0005515
Cca03g02112 696 SUPERFAMILY ARM repeat 424 595 IPR016024 -
Cca03g02112 696 Gene3D - 153 273 IPR011989 -
Cca03g02112 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 227 269 IPR000225 GO:0005515
Cca03g02112 696 Gene3D - 274 406 IPR011989 -
Cca03g02112 696 Gene3D - 407 500 IPR011989 -
Cca03g02112 696 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 311 353 IPR000225 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02112 Cca-Chr3 41449825 41456780 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02112 166 409 U-box Gene Family AT5G67340 28.049 2.07e-15 78.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g02112 BTB 2.3e-18 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02112 - - ccaj:109817836 1330.08
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02112 03 41449825 41456780 Cca03g02112 03 41449825 41456780 ECH