Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02102 ATGGCTGCACCGCCAAATTGCAGGCTCCAAACCATGTTGCGAGCTGCGGTGCAATCTGTTCAGTGGACTTACAGCCTCTTCTGGCAACTCTGTCCACAACAAGGGATATTGACGTGGGGTGATGGATACTACAACGGAGCAATCAAGACAAGGAAGACGGTTCAAGCAATGGAGGTTAGCACTGAAGAAGCGTCTCTGCAAAGAAGTGAACAACTAAGAGAGTTATACGAATCTTTGTCTGGTGGGGAGACAAACACTCAAACTAGAAGACCATGTGCTGCGTTGTCGCCTGAGGATCTAACGGAATCTGAATGGTTCTATTTGTTGTGTGTTTCATTCTCCTTTCATCCAGGTGTCGGGTTGCCCGGAACGGCATATGCGAGGAGACAGCATTTATGGCTCAGTGGTGCAAACGAAGTAGACAGCAAAACATTTTCAAGAGCTATTCTTGCCAAGGTAACTCATTTTGTGTCATGCAAAGTGCAGACAGTGGTGTGCATTCCTGTGTTGGAGGGCGTGGTTGAGTTGGGCACAACGGATAAGGTGGAAGAAGACCTCAATTTCATCCAACACATAAAGAGCTTCTTCGTAGAGCAGGCTTCCATGCCGAATAAGCCTGCATTATCAGAGCACTCCACTTCCAATCCCACATCATCGTACCCTGCCACTGTGGCAGCGAATATTCCCAACGAAAAGGGAGAAGGTAAAATGAATGCGgaagcagaagcagaagcagaagcagaagcagTTCGTAACGGTGGTTTCATACCGAGCGAGTTGATGGAGTTGGACCCGTTTGTGGAATTCAGCGTTGGATCACCTGGAGATGGCTCCAACCACTTGGATTCTTTCCCCNNNNNNNNNNGCAGGCTTAGAGCACCTTCAACTTCAACTACCACCACCTTCAGCACATCCTGCTCCCTCAGAAAACCTAGCGCAAGTGTCCCTTACTTGCACGCCAACCGGCACAAGGGGAAGGTGGCGGCGACACCCTACGAGACCAGCCACGTGATGGCGGAACGCCGCCGTCGGGAGAAGTTGAATGAGAGGTTTCTCATTCTGCGGTCGATGGTGCCTTTTGTAACCAGAATGGACAAGGCGTCCATTCTGGGTGACACCATCGAGTACATTAAACAGCTGCGGGAGAAGATTGAGAGCCTGGAGGCACGTGAGGGGCACGCGAGGAAGAGGAGGGTGAGGGAGGTGGAGGTTTCGATCATAGAGAGTGAGGCATTGTTGGAGGTGGAGTGTGTGCACAGGGAAGGATTGTTGCTGGATTTGATGACACTGTTGAGGGAGTTAGGGGTGGAAGTGATAATGGTGCAGTCTTGGGTTAAGGATGATGGGTTTTTTGTGGCGGAAATGAGGGCAAAGGTGAGGGAAAGTAGTAACGGGAAAAAAGCTAGCATTGTGGAAGTGAAGAAGGCTCTTAACCAGGTTATACCTCATCATGAACCATACGCACTTGTTTCCAATGAGCCATACACACTTGTTTGCAGTGATCATTTTTAA 1512 0.4821 MAAPPNCRLQTMLRAAVQSVQWTYSLFWQLCPQQGILTWGDGYYNGAIKTRKTVQAMEVSTEEASLQRSEQLRELYESLSGGETNTQTRRPCAALSPEDLTESEWFYLLCVSFSFHPGVGLPGTAYARRQHLWLSGANEVDSKTFSRAILAKVTHFVSCKVQTVVCIPVLEGVVELGTTDKVEEDLNFIQHIKSFFVEQASMPNKPALSEHSTSNPTSSYPATVAANIPNEKGEGKMNAEAEAEAEAEAVRNGGFIPSELMELDPFVEFSVGSPGDGSNHLDSFPXXXXRLRAPSTSTTTTFSTSCSLRKPSASVPYLHANRHKGKVAATPYETSHVMAERRRREKLNERFLILRSMVPFVTRMDKASILGDTIEYIKQLREKIESLEAREGHARKRRVREVEVSIIESEALLEVECVHREGLLLDLMTLLRELGVEVIMVQSWVKDDGFFVAEMRAKVRESSNGKKASIVEVKKALNQVIPHHEPYALVSNEPYTLVCSDHF 503
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02102 503 Coils Coil 370 397 - -
Cca03g02102 503 SMART finulus 337 386 IPR011598 GO:0046983
Cca03g02102 503 PANTHER TRANSCRIPTION FACTOR TT8 8 483 - -
Cca03g02102 503 PANTHER TRANSCRIPTION FACTOR TT8 8 483 - -
Cca03g02102 503 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 9 196 IPR025610 -
Cca03g02102 503 Gene3D - 331 394 IPR036638 GO:0046983
Cca03g02102 503 Pfam Helix-loop-helix DNA-binding domain 334 381 IPR011598 GO:0046983
Cca03g02102 503 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 331 380 IPR011598 GO:0046983
Cca03g02102 503 MobiDBLite consensus disorder prediction 205 224 - -
Cca03g02102 503 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 334 395 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02102 Cca-Chr3 41324778 41336692 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02102 1 483 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G09820 48.743 1.20e-153 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Cca03g02102 bHLH-MYC_N 2.2e-51 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02102 - - gmx:100780422 428.713
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02102 03 41324778 41336692 Cca03g02102 03 41324778 41336692 ECH