Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02096 ATGAGCTATCACGCGCAGAATAATGATGATACGCACAGAGGTTTGAAAAGAAAGCCCGAATATATGGATCGGGGGCAAGAACGGCGTCCATATAATACGAATTCTAGACCTTATGATAGGAACGCGCTTCCTGATGGTTGGTTAGACTGCCCAGCGCAAGGGCAAGAACTAGGATGCATAATCCCTTCAAAGGTTCCACTTGGTGAATCCTTCAATGATCGCATTCCAAGTCAAAAATATACTCCCAAGCAAGCAATTCTTCAACAAAGAGCCTTAGGTAGAGAACTTGGTTTAGTGATTGATCTGACAAATACTACACGTTACTATCCTGTATCAGATTGGACAAAAGAAGGGATTGGCCATGTCAAGATAAGGTGCAAAGGAAGAGATGCTGTACCTGATGATGAATCTGTAAAAGAATTTTGTGATGAGGTTATGGAATTTTGCTCCCAAAGAACAAATGCAAAGAAATATATACTTGTACATTGCACACATGGGCATAATCGTACAGGTTATATGATTGTTCACTTCCTTGTGCGTACGGAATCTATGTCTGTTACTGAGGCAATAAATAAATTTGCTGGGGCCCGTCACCCAGGAATTTACAAGCAAGACTACATTGATGCCCTTTACATGTTTTATCATGAAAAGAAGCCTGAAGATCTTATTTGTCCTCTAACTCCTGAGTGGAAGAGACATTGTGATCCTGATTTTCGTGGCACAGCTGTTCCAGCTGTTGTGGACAATTATGGACACATTCCTGAACAGGAGAATATTGTGAGGAATAAAGTATTGTCAAGTGATGATGTTTTGGGAGATCCAATTCCTCCAAACCAGCTGCGTGCAATGCAAGAAGCTTGCTATCAACTGCTCAAGTTGGGGACCGGGGGAAGAGGACGTATGCAGTTTCCTGGATCACACCCTGTTTCTTTGAACAGGGACAATCTGCAACTCTTAAGACAACGATATTACTATGCCACATGGAAAGCTGATGGGACACGATATATGATGCTGATTACTGGCGATGGGTGTTATCTGATTGACAGGAAATTTCTTTTCCAAAAGATCAATATGCGATTTCCTTGTAGATATTCAAATGGGGGTACGCCTGAGAGGAATCACCACTACACATTACTTGATGGGGAGATGATTATTGACACGGATCCACATACACAGAAGCAAGACAGAAGATACCTTATTTATGATTTGATAGCGATCAATCAAGTGTCTTTGATAGAGCTTCCGTTCTATGAAAGGTGGAAATTGCTGGAGAAAGAAGTAATTGAACCTCGGAACATGGAACGGGAGGGCCTTTCCAAGAGCATAAATCCTTATTACAGATATGACTTGGAACCATTCAGTGTGAGAAGGAAGGGTTTTTGGTTACTATCTACTGTGTCAAAGCTCCTTCATAAATTCATTCCACAACTCTCGCATTCATCAGATGGCCTTGTATTCCAGGGTTGGGATGATCCATATGTCCCTCGCACACATGAAGGTCTTCTGAAGTGGAAATACCCAGAGATGAACTCTGTTGATTTCCTCTATGAGGTGGGAGCTGGTGATCGTCCCTTGCTTTTTCTATTTGAACGAGGAAGGAAGAAGTTAATGGACGAAAATGTTATTTTTAAAGATGCATCAGACATTTCTTCCTATTCCGGGAAGATCATTGAGTGCTACTGGGATTCCGCGGAACATCATTGGGTCTGTATGCGGATCAGAATAGACAAAGCAACTCCAAATGACATCAATACCTATAGAAAGGTAATGCGAAGCATAAAGGATAATATCACAGAAGATGTCTTATTGAATGAGATCAATGAGATCATTAGCCTGCCATTGTATGCAGACAGAATACATAGGGATATCAAGGCTCACCATCATATGGTCTCTTCACGGCGCAAGTGA 1908 0.4161 MSYHAQNNDDTHRGLKRKPEYMDRGQERRPYNTNSRPYDRNALPDGWLDCPAQGQELGCIIPSKVPLGESFNDRIPSQKYTPKQAILQQRALGRELGLVIDLTNTTRYYPVSDWTKEGIGHVKIRCKGRDAVPDDESVKEFCDEVMEFCSQRTNAKKYILVHCTHGHNRTGYMIVHFLVRTESMSVTEAINKFAGARHPGIYKQDYIDALYMFYHEKKPEDLICPLTPEWKRHCDPDFRGTAVPAVVDNYGHIPEQENIVRNKVLSSDDVLGDPIPPNQLRAMQEACYQLLKLGTGGRGRMQFPGSHPVSLNRDNLQLLRQRYYYATWKADGTRYMMLITGDGCYLIDRKFLFQKINMRFPCRYSNGGTPERNHHYTLLDGEMIIDTDPHTQKQDRRYLIYDLIAINQVSLIELPFYERWKLLEKEVIEPRNMEREGLSKSINPYYRYDLEPFSVRRKGFWLLSTVSKLLHKFIPQLSHSSDGLVFQGWDDPYVPRTHEGLLKWKYPEMNSVDFLYEVGAGDRPLLFLFERGRKKLMDENVIFKDASDISSYSGKIIECYWDSAEHHWVCMRIRIDKATPNDINTYRKVMRSIKDNITEDVLLNEINEIISLPLYADRIHRDIKAHHHMVSSRRK 635
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02096 635 Gene3D Protein tyrosine phosphatase superfamily 18 237 IPR029021 -
Cca03g02096 635 SMART dsp_5 76 216 IPR020422 GO:0006470|GO:0008138
Cca03g02096 635 SUPERFAMILY (Phosphotyrosine protein) phosphatases II 43 230 IPR029021 -
Cca03g02096 635 PANTHER MRNA-CAPPING ENZYME 6 635 - -
Cca03g02096 635 PIRSF mRNA_capping_HCE 30 635 IPR017074 GO:0004484|GO:0006370|GO:0140818
Cca03g02096 635 MobiDBLite consensus disorder prediction 9 34 - -
Cca03g02096 635 CDD Adenylation_mRNA_capping 278 506 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cca03g02096 635 ProSitePatterns Tyrosine specific protein phosphatases active site. 161 171 IPR016130 GO:0016311|GO:0016791
Cca03g02096 635 Pfam Dual specificity phosphatase, catalytic domain 95 214 IPR000340 GO:0008138|GO:0016311
Cca03g02096 635 SUPERFAMILY Nucleic acid-binding proteins 508 621 IPR012340 -
Cca03g02096 635 ProSiteProfiles Tyrosine specific protein phosphatases domain profile. 139 208 IPR000387 GO:0016311|GO:0016791
Cca03g02096 635 Pfam mRNA capping enzyme, C-terminal domain 541 603 IPR013846 -
Cca03g02096 635 Gene3D DNA ligase/mRNA capping enzyme 266 505 - -
Cca03g02096 635 Pfam mRNA capping enzyme, catalytic domain 307 505 IPR001339 GO:0004484|GO:0005524|GO:0006370
Cca03g02096 635 Gene3D - 537 611 IPR012340 -
Cca03g02096 635 PANTHER MRNA-CAPPING ENZYME-LIKE 6 635 - -
Cca03g02096 635 CDD RNA_5'-triphosphatase 46 212 - -
Cca03g02096 635 MobiDBLite consensus disorder prediction 1 39 - -
Cca03g02096 635 SUPERFAMILY DNA ligase/mRNA capping enzyme, catalytic domain 284 506 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02096 Cca-Chr3 41252623 41261589 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02096 32 625 Protein tyrosine phosphatase (PTP) family AT3G09100 63.787 0.0 787
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02096 K13917 - ccaj:109817851 1319.68