Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02095 ATGACCATGTCAAGAGCATTGTGTAGACCAAGATGTACACAGCCACCGAAAAACGTTCCTTCCAGTGGGCAAAGACAGATAATGAGGCCAAAAGAGAAGGTGGTGTTGGTGATGGGAGCCACAGGGTGTGGGAAAACGAGGCTCTCCATCGACCTGGCCTCGTGTTTTCCATCAGAAATCATCAACTCAGATAAGATACAAGTGTACGAAGGGCTTGACGTTGTGACAAACAAAGTCACAAAGGAAGAACAACGTGGGATCCCGCACCACTTGCTAGGGACACAGAACCCCAACACCGAATTCACAGCTTCTGACTTTTGTGACATGGCCTCACACGCCATTCAATCAATCACCGACCGTCACAAGCTTCCAATCATCGTCGGAGGTTCCAACTCCTACATTGAGGCCCTCGTAGACAAGTTTGGCTCCAGGTATGATTGGTGTTGTCTTTGGGTGGACGTGTCGATGCCGGTGCTTCATTCCTACGTGGCGCAACGAGTGGATGAGATGGTAGATGGTGGAATGGTTAAGGAGTTGAGACCTTTCTTCAATCCAAACGGGGACTACTCAAGGGGGATAAGAAAAGCCATAGGGGTGGCGGAATTCGACGCGTATTTTCGGAGGGAAGCGTGTTCGAGCAACGAAACGAGGGTGAGGTTGCTGCAAGAAGCGGTGAGGGACGTGAAGAGGAACACGTGCCAGTTGGCATGCAAGCAACTTGGGAGGATTCATAGGCTCAGAAGTGTTAAGGGATGGAACATTCACCGTGTTTCTGCCACACCCGTCTTTCAGAAACGTGGCCACGAAGCCAATGAGACGTGGAACAGTATGGTGGCGCAGCCATGTACCTCCGTAGTTTCACAGTTTCTCTACAATGCCAATGTTGTTTCTCGCTCTAGAGTCTCACCTTCTCTGCAACAAAATTAA 927 0.4995 MTMSRALCRPRCTQPPKNVPSSGQRQIMRPKEKVVLVMGATGCGKTRLSIDLASCFPSEIINSDKIQVYEGLDVVTNKVTKEEQRGIPHHLLGTQNPNTEFTASDFCDMASHAIQSITDRHKLPIIVGGSNSYIEALVDKFGSRYDWCCLWVDVSMPVLHSYVAQRVDEMVDGGMVKELRPFFNPNGDYSRGIRKAIGVAEFDAYFRREACSSNETRVRLLQEAVRDVKRNTCQLACKQLGRIHRLRSVKGWNIHRVSATPVFQKRGHEANETWNSMVAQPCTSVVSQFLYNANVVSRSRVSPSLQQN 308
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02095 308 Pfam IPP transferase 144 240 - -
Cca03g02095 308 Pfam IPP transferase 67 141 - -
Cca03g02095 308 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 34 148 IPR027417 -
Cca03g02095 308 MobiDBLite consensus disorder prediction 1 26 - -
Cca03g02095 308 Gene3D Crystal structure of tRNA isopentenylpyrophosphate transferase (bh2366) domain 156 254 - -
Cca03g02095 308 Gene3D - 31 290 IPR027417 -
Cca03g02095 308 PANTHER TRNA DIMETHYLALLYLTRANSFERASE 22 295 IPR039657 -
Cca03g02095 308 PANTHER ADENYLATE ISOPENTENYLTRANSFERASE 5, CHLOROPLASTIC 22 295 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02095 Cca-Chr3 41243766 41244915 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02095 142 290 C2H2 Transcription Factor Family AT2G27760 34.659 5.79e-27 108
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02095 K10760 - gmx:100777757 508.834
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02095 03 41243766 41244915 Cca03g02095 03 41243766 41244915 ECH
Cca03g02095 03 41243766 41244915 Cca02g01152 02 28946743 28947817 PCT