Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02086 ATGGGTAAGATTCTCCGGGAGCTCGCGAAGCCGTCGGCCAATTCCTCATCGGCGTATCCCTCCTCGGCTCCGGCGACCACGTCGTCGACGTCGGTGACGGAGACGGTGAGGGGGTCGCACCAGTTCAAGATCACGGGGTACTCGCTCTCGAAGGGGATCGGGATTGGGAAGTACATAGCTTCCGACGTGTTTTCCGTCGGAGGCGTGGAGGACAATGCCACCTACGTGTCGCTCTTCATCGCGTTGGCCAGCGACGGCACCGACGTTAGGGCTCTCTTCGAGTTGACGCTCTTGGATCAGAGTGGGAAGGAGAGGCACAAGGTGCATAGCCATTTCGAGAGGACCCTCGAGAGCGGGCCCTACACCTTGAAATACCGCGGTAGTATGTGGGGTTACAAGCGGTTTTTTAAGAGAACAGCTCTAGAGACATCAGACTACCTTAAAGACGATTGTCTGTCAGTGAGTTGTAGTGTTGGTGTTGTAAGGTCGCGAACAGAAGGTCCTAAAATCTATACCATAGCTGTACCGTCTTCTAGCATTGGTCAGCAATTTGGGAAACTGCTGGAAAGTGGTAAAGGAAGTGATGTGAATTTTGAAGTGAATGAAGAAATTTTTCCTGCTCATAAATTGGTACTAGCAGCCCGTTCACCTGTTTTCAGAGCCCAGCTTTTTGGTCCTATGAAAGATCACAATACCCAGTGTATTAAAGTTGAAGACATGGAAGCTCCAGTTTTCAAGgcattgcttcattttatatactgggactcgctaccagacatgcaagagcttactgggttgaactcaaaatgggcatcaaccttgatgtgtcagcatcttctagcagcagctgatcgatatggcttagagaggcttaggctgatgtgcgaagagagtctctgtgaagatgttgcaattaatactgtggctacaactctagccttggctgagcagcaccattgtttccagctgaaaGCTGTCTGTCTCAAGTTTATTGCTACCTCAGAAAATCTAAGAGCTGTGATGCAAACTGACGGATTTGAGTACTTGAAGGAAAGTTGCCCATCTGTTCTGACTGAGCTATTGGAGTACGTGGCCAGATTTACTGAGCATTCGGACTTCATGTGCAAACATAGGAATGAAGCAATACTTGATGGCAGTGACATAAATGGGAGGCGGGTGAAGCAAAGGCTCTAG 1194 0.3987 MGKILRELAKPSANSSSAYPSSAPATTSSTSVTETVRGSHQFKITGYSLSKGIGIGKYIASDVFSVGGVEDNATYVSLFIALASDGTDVRALFELTLLDQSGKERHKVHSHFERTLESGPYTLKYRGSMWGYKRFFKRTALETSDYLKDDCLSVSCSVGVVRSRTEGPKIYTIAVPSSSIGQQFGKLLESGKGSDVNFEVNEEIFPAHKLVLAARSPVFRAQLFGPMKDHNTQCIKVEDMEAPVFKALLHFIYWDSLPDMQELTGLNSKWASTLMCQHLLAAADRYGLERLRLMCEESLCEDVAINTVATTLALAEQHHCFQLKAVCLKFIATSENLRAVMQTDGFEYLKESCPSVLTELLEYVARFTEHSDFMCKHRNEAILDGSDINGRRVKQRL 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02086 397 SUPERFAMILY TRAF domain-like 34 163 - -
Cca03g02086 397 MobiDBLite consensus disorder prediction 10 32 - -
Cca03g02086 397 Gene3D - 302 380 - -
Cca03g02086 397 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 36 162 IPR008974 GO:0005515
Cca03g02086 397 Pfam BTB/POZ domain 185 301 IPR000210 GO:0005515
Cca03g02086 397 CDD BTB_POZ_BPM_plant 180 300 - -
Cca03g02086 397 CDD BACK_AtBPM-like 300 363 IPR034090 -
Cca03g02086 397 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1 19 376 IPR045005 GO:0016567
Cca03g02086 397 ProSiteProfiles MATH/TRAF domain profile. 29 158 IPR002083 GO:0005515
Cca03g02086 397 SUPERFAMILY POZ domain 171 301 IPR011333 -
Cca03g02086 397 SMART BTB_4 194 303 IPR000210 GO:0005515
Cca03g02086 397 CDD MATH 38 158 IPR002083 GO:0005515
Cca03g02086 397 PANTHER BTB/POZ AND MATH DOMAIN-CONTAINING PROTEIN 1-LIKE 19 376 - -
Cca03g02086 397 Gene3D Potassium Channel Kv1.1; Chain A 170 298 IPR011333 -
Cca03g02086 397 ProSiteProfiles BTB domain profile. 194 253 IPR000210 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02086 Cca-Chr3 41120212 41125399 Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Cca03g02086 BTB 2.2e-25 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02086 K10523 - gmx:102668882 690.649
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02086 03 41120212 41125399 Cca03g02086 03 41120212 41125399 ECH
Cca03g02086 03 41120212 41125399 Cca02g01159 02 29033055 29040543 PCT