Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02084 ATGGCTACTGTCCTTCTCAGAAAttcctcttccacttcccgtcgcctcttgcccttcgcctctcaaatccactcttccttctctcgctcacctctctctcctcccaatgactcctcctcctcctcttcctcttcctcttcTTTCAATTCCAATCCATGGTGGAGATCCATGGCCACCTTCACCAGAACGAAACCTCACGTTAATGTCGGGACTATTGGACACGTGGATCACGGCAAGACCACGCTTACCGCGGCAATCACCAAGGTGCTTGCGGACGAAGGGAAAGCCAAGGCTGTGGCCTTCGATGAAATCGATAAGGCTCCTGAAGAGAAGAAGAGAGGAATCACGATTGCAACGGCACATGTTGAGTATGAGACTGTGAAACGACATTATGCTCATGTGGACTGCCCTGGACACGCTGATTATGTCAAAAATATGATTACAGGAGCTGCTCAGATGGATGGTGGTATACTTGTTGTATCTGCACCTGATGGTCCGATGCCTCAAACCAAGGAGCACATTCTTCTTGCTCGCCAAGTTGGTGTGCCATCTCTTGTGTGCTTTCTAAATAAAGTTGATGCTGTTGATGATCCAGAGTTGTTAGAGCTTGTAGAAATGGAGCTGCGTGAACTTCTGAGCTTCTACAAGTTCCCTGGGGATGAGATCCCTATCATTAGAGGTTCAGCATTGTCCGCTTTACAGGGTACAAACGAGGAGATTGGAAGAAAGGCCATTCTAAAATTAATGGAAGCTGTAGATGCATACATTCCTGACCCTGTTCGCCAGCTTGACAAACCTTTCCTAATGCCCATTGAAGATGTATTCTCAATTCAGGGACGTGGAACAGTTGCCACTGGCCGTGTTGAACAAGGAATTATTAAAGTTGGTGATGAAGTGGAGGTGTTGGGTCTAATGCAGGGTGGTCCTCTGAAAACAACAGTAACTGGAGTTGAGATGTTCAAGAAGATTTTGGATCAAGGCCAAGCTGGTGATAATGTTGGTCTTCTTCTCCGTGGTCTGAAGCGTGAAGATATTCAACGTGGTCAGGTCATTGCCAAGCCTGGATCTATAAAAACATACAAGAAATTTGAGGCAGAAATATATGTTCTCACAAAGGATGAGGGTGGGCGACACACTGCTTTCTTCTCTAACTATAGACCTCAATTTTACTTGAGGACTGCTGATATCACTGGAAAAGTAGAGTTGCCTGAAAATGTTAAAATGGTTATGCCTGGAGACAATGTTACTGCCGTGTTTGAATTGATTTCAGCAGTTCCACTTGAAGCAGGACAAAGATTTGCCTTGAGAGAAGGTGGCAGAACAGTTGGTGCAGGTGTGGTATCAAAAGTACTGAGCTAG 1359 0.4121 MATVLLRNSSSTSRRLLPFASQIHSSFSRSPLSPPNDSSSSSSSSSSFNSNPWWRSMATFTRTKPHVNVGTIGHVDHGKTTLTAAITKVLADEGKAKAVAFDEIDKAPEEKKRGITIATAHVEYETVKRHYAHVDCPGHADYVKNMITGAAQMDGGILVVSAPDGPMPQTKEHILLARQVGVPSLVCFLNKVDAVDDPELLELVEMELRELLSFYKFPGDEIPIIRGSALSALQGTNEEIGRKAILKLMEAVDAYIPDPVRQLDKPFLMPIEDVFSIQGRGTVATGRVEQGIIKVGDEVEVLGLMQGGPLKTTVTGVEMFKKILDQGQAGDNVGLLLRGLKREDIQRGQVIAKPGSIKTYKKFEAEIYVLTKDEGGRHTAFFSNYRPQFYLRTADITGKVELPENVKMVMPGDNVTAVFELISAVPLEAGQRFALREGGRTVGAGVVSKVLS 452
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02084 452 Hamap Elongation factor Tu [tuf]. 55 452 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cca03g02084 452 Pfam Elongation factor Tu GTP binding domain 64 257 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 361 451 IPR009001 -
Cca03g02084 452 Pfam Elongation factor Tu C-terminal domain 356 450 IPR004160 -
Cca03g02084 452 PANTHER ELONGATION FACTOR TU-RELATED 13 451 - -
Cca03g02084 452 CDD EFTU_II 267 355 IPR033720 -
Cca03g02084 452 TIGRFAM EF-Tu: translation elongation factor Tu 56 451 IPR004541 GO:0003746|GO:0005525|GO:0006414
Cca03g02084 452 Pfam Elongation factor Tu domain 2 281 351 IPR004161 GO:0005525
Cca03g02084 452 CDD EFTU_III 358 447 - -
Cca03g02084 452 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 282 IPR027417 -
Cca03g02084 452 TIGRFAM small_GTP: small GTP-binding protein domain 67 203 IPR005225 GO:0005525
Cca03g02084 452 ProSitePatterns Translational (tr)-type guanine nucleotide-binding (G) domain signature. 105 120 IPR031157 -
Cca03g02084 452 Gene3D Translation factors 262 392 - -
Cca03g02084 452 PANTHER ELONGATION FACTOR TU 13 451 - -
Cca03g02084 452 ProSiteProfiles Translational (tr)-type guanine nucleotide-binding (G) domain profile. 64 260 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 PRINTS GTP-binding elongation factor signature 68 81 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 PRINTS GTP-binding elongation factor signature 112 120 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 PRINTS GTP-binding elongation factor signature 132 142 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 PRINTS GTP-binding elongation factor signature 148 159 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 PRINTS GTP-binding elongation factor signature 185 194 IPR000795 GO:0003924|GO:0005525
Cca03g02084 452 Gene3D Translation factors 396 451 - -
Cca03g02084 452 MobiDBLite consensus disorder prediction 25 50 - -
Cca03g02084 452 SUPERFAMILY Translation proteins 261 357 IPR009000 -
Cca03g02084 452 Gene3D - 56 259 IPR027417 -
Cca03g02084 452 CDD EF_Tu 65 259 IPR041709 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02084 Cca-Chr3 41103026 41107748 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02084 62 450 Eukaryotic Initiation Factors Gene Family AT5G60390 31.050 9.53e-46 163
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02084 K02358 - gmx:100776891 797.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02084 03 41103026 41107748 Cca03g02084 03 41103026 41107748 ECH