Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02083 ATGGAGCGTGGTGCAGAGGCGAGGGTTTTAGTTGTGGTTTCTGATCATGCTTTGGATTACTTTCCAGCACAACTGTTGGATACTGAAAGTTTGCCCTTGGTCATCGCAATTTCTGAAAGAGTTGGCTCTGAAAGCCCAATTAACTGTGAGTTAAGTGGTTTAAGGGGTGTAATAGTTGAAGAAATGGAAGATGCAACTGGTCGTGTGCATGTGGTTGGAGCTCAGGGTGCCAAGGATTTTATATTACCTGTTGGAAGTGAGGCATTTCAAGGGTCAGATCAATCTCTTGTACGAACCTTGGATTATTTCCATGGTATCAAGATGCTTGGTGTCAAGAGAATTGAAAGGGTACTTCCAATAGGCAACTCCTTGACTGTTGTTGGAGAGGCTACTAAAGATGAGACTGGGACCATTAGAATTCAGCGACCCTACAATGGGCCATTTTATGTCTCTCGACAAACAATTGATCAGATTATTACAAATCTTGGGAGATGGGCAAGGTGGTATAAGTGGGCGTCTATGGGTTTTACAATATTTGGTGCTTATGTAATGGCTAAGCATGTTATTCAGCACATCTTGGAAAGATGGCGCTTAAAAAGGGTTCTTGCTGCAGCTGCTAAGAGGTCAAGACAAGATAATGAAGGTGATAAGGATGACACCTTACCAGATGGTGGTAAAAGAATGCCAGATTTGTGTGTAATATGCCTAGAGCAGGAATATAATACTGTTTTTGTCCCGTGTGGGCATATGTGCTGCTGTACAACTTGTTCTTCACACTTAACTGTTTGCCCTTTTTGCCTGCGACTGATAGAGCTGGAGCTAACAAATTCAGGACTCATTGCTATTATGGACAGGCTCTTGTATTTGATTGTTAGGCCTAAACTTGTTCCGAACTTTAGTCTACCAAGGTTCAGTCAAAATTCTCTCTTACAACACCTCACCCTGCTCAAGATTACTTTGGGGAATCATAAAGTTGGTCTAGTCTTTTGA 990 0.4212 MERGAEARVLVVVSDHALDYFPAQLLDTESLPLVIAISERVGSESPINCELSGLRGVIVEEMEDATGRVHVVGAQGAKDFILPVGSEAFQGSDQSLVRTLDYFHGIKMLGVKRIERVLPIGNSLTVVGEATKDETGTIRIQRPYNGPFYVSRQTIDQIITNLGRWARWYKWASMGFTIFGAYVMAKHVIQHILERWRLKRVLAAAAKRSRQDNEGDKDDTLPDGGKRMPDLCVICLEQEYNTVFVPCGHMCCCTTCSSHLTVCPFCLRLIELELTNSGLIAIMDRLLYLIVRPKLVPNFSLPRFSQNSLLQHLTLLKITLGNHKVGLVF 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02083 329 CDD RING-HC_LRSAM1 231 270 - -
Cca03g02083 329 PANTHER - 62 246 IPR044231 GO:0004842|GO:0016567
Cca03g02083 329 PANTHER - 23 62 IPR044231 GO:0004842|GO:0016567
Cca03g02083 329 Pfam Zinc finger, C3HC4 type (RING finger) 230 270 - -
Cca03g02083 329 SUPERFAMILY RING/U-box 231 272 - -
Cca03g02083 329 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 203 274 IPR013083 -
Cca03g02083 329 ProSiteProfiles Zinc finger RING-type profile. 232 266 IPR001841 -
Cca03g02083 329 Pfam E3 Ubiquitin ligase 63 180 IPR022170 GO:0004842|GO:0006996|GO:0016567
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02083 Cca-Chr3 41095558 41103202 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02083 4 215 C3H Transcription Factor Family AT1G63900 50.996 1.92e-72 224
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02083 K15688 - gmx:100800734 348.591
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02083 03 41095558 41103202 Cca03g02083 03 41095558 41103202 ECH