Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02071 ATGAAGGGCCAGGTGGATTCCCCTGTTGGTGTTCTTGAGGACTATTTCAAGAGCTCGGAGTCAGAAATATGTTCTTCCAAAGAACCAAGTACTGTGGATTCTGGGTCTCAAGGTAAATCAAAACCTGGTTCTAAGTTGCATGCGTTTCTTCAATTGTTGAGAATCAAATCGGAGAAGCCAATGGCCACATTGCATCCTCTCAGTGTCCTCAAGCTCTCCAGAAGAATGAGCACTAGCATGAGCGAGACTATAATAAATGCAGATTCATCCTTGCACATGTCACCCTGGAAGATCTTCACTCACCATGAGATACAAATTGCTACCAATAACTTCGCCCAAGAAAATTTGATTGGAAAGGGTGGATATGCTGAGGTTTACAAAGGGTGTTTGCCAAATGGTCAGCTGGTAGCGATTAAACGGTTGACACGTGGAACAGAAAATGAAAGTACAGGGGACTTCTTATCAGAACTTGGGATAATGGCTCATGTAAACCACCCCAATACTGCAAAGTTAGTTGGCTATGGAGTGGAGGGAGGAATGTATTTAGTGCTTGAGTTGTCTGAAAAAGGGTGCTTAGCTTCGGTGCTCAATGGTTCCAAGGAGAAACTACCGTGGTCTATTAGGCAGAAAATAGCATTAGGAACAGCTGAGGGTATATTGTATCTTCATGAAGGTTGTCAAAGAAGAATTATCCACAGGGATATAAAAGCAGCAAATATCTTGCTTAGTGAGGACTTTGAGCCTCAGATTTGTGATTTCGGGCTAGCAAAATGGCTACCAGAGAATTGGACTCATCACACCGTTTCAAAAGTTGAAGGGACTTTTGGTTACCTTGCACCTGAATACTTGCTTCATGGGATACTGGATGAGAAAACAGACGTATTTGCTTTTGGTGTGGTGGTACTAGAATTAGTCACTGGACGAAGAGCACTTGATTATTCTCAACAAAGTCTTGTTTTGTGGGCAAAACCTTTGCTGAAAAAGAATTATATTAGAGAGCTGATTGATCCTTCACTGGGCGATGACTTTGACTGTCGGCAGATTAAAATTATGCTATTGGCAGCTTCTTTATGCATTCAACAATCCTCTATTCGTCGTCCCTCTATGAAACAGGTTGTACAGCTTTTGAATGGCAACCTTAGCTGCTTGAAGTTCACGACGAAATCTCAACTTCCATTCTTCCGAAAAGTCTTTCGAGAAGAACCCCTTGATTCTGATTTCTGA 1224 0.4208 MKGQVDSPVGVLEDYFKSSESEICSSKEPSTVDSGSQGKSKPGSKLHAFLQLLRIKSEKPMATLHPLSVLKLSRRMSTSMSETIINADSSLHMSPWKIFTHHEIQIATNNFAQENLIGKGGYAEVYKGCLPNGQLVAIKRLTRGTENESTGDFLSELGIMAHVNHPNTAKLVGYGVEGGMYLVLELSEKGCLASVLNGSKEKLPWSIRQKIALGTAEGILYLHEGCQRRIIHRDIKAANILLSEDFEPQICDFGLAKWLPENWTHHTVSKVEGTFGYLAPEYLLHGILDEKTDVFAFGVVVLELVTGRRALDYSQQSLVLWAKPLLKKNYIRELIDPSLGDDFDCRQIKIMLLAASLCIQQSSIRRPSMKQVVQLLNGNLSCLKFTTKSQLPFFRKVFREEPLDSDF 407
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02071 407 Gene3D Transferase(Phosphotransferase) domain 1 188 390 - -
Cca03g02071 407 ProSiteProfiles Protein kinase domain profile. 111 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02071 407 SMART serkin_6 111 383 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02071 407 Gene3D Phosphorylase Kinase; domain 1 81 185 - -
Cca03g02071 407 SUPERFAMILY Protein kinase-like (PK-like) 90 376 IPR011009 -
Cca03g02071 407 Pfam Protein kinase domain 112 318 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02071 407 PANTHER PROTEIN KINASE FAMILY PROTEIN 4 403 - -
Cca03g02071 407 ProSitePatterns Protein kinases ATP-binding region signature. 117 139 IPR017441 GO:0005524
Cca03g02071 407 MobiDBLite consensus disorder prediction 22 43 - -
Cca03g02071 407 PANTHER OS08G0249100 PROTEIN 4 403 - -
Cca03g02071 407 ProSitePatterns Serine/Threonine protein kinases active-site signature. 230 242 IPR008271 GO:0004672|GO:0006468
Cca03g02071 407 MobiDBLite consensus disorder prediction 22 41 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02071 Cca-Chr3 40975849 40979703 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02071 99 378 Receptor kinase-like Gene Family AT1G53420 43.056 3.74e-71 239
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Cca03g02071 Pkinase 3.6e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02071 - - gmx:100818913 702.205
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02071 03 40975849 40979703 Cca03g02980 03 51250573 51254441 ECH
Cca03g02071 03 40975849 40979703 Cca02g01516 02 33751042 33754372 ECH
Cca03g02071 03 40975849 40979703 Cca03g02071 03 40975849 40979703 ECH
Cca02g01175 02 29298369 29302130 Cca03g02071 03 40975849 40979703 ECH
Cca08g02184 08 55093125 55096703 Cca03g02071 03 40975849 40979703 ECH