Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02070 ATGTCCCTTCCCTTCCATGCCTACCTCATCCCTCTCCTATTCCTCACTCTCCCAACCCCTTCGCTCGCCGCCGTTCCATGCCCCCTCAACATAACCGTCCTCCGGGTGGTGGGCGGCGGCGCCCGCCCCTCCTTCGACTCCGGGACGCAGTGCCACTACATCCTCCAGGCCCTCCACCTCCTGCAGGCCGACTACCTCCGCCGCAGCCACCGCTTCGTGCCTCCCCTAAACGCCTCCGACTCCTGCTGGTCCACCTTCCAATCCTTCATCAACGAGTTCGAGCCCAGCTTCGACATCCGCGCCTCCTGCGGCCTCCAAACGGCGTGGATCTCCCAAGGCTGCATGAACATCACCACCAAGCAACAATTCGAAGCCACCGTCCCCGCCGCCGCCACACAAGCCGTCCAAACGAACTGCAACCAATCCTTGGACAACAACTCCCCCTGCGCCCTCTGCACCACCAAACTCTCCACCCTCCTCTCCTACTTGACGGGACCCACCGTAGGGAACGTCACCGACTGCAGAGCTTACACTTCCATCTACGCTGCTTCTCTCTCCGATCAATACGGCGCCACCGACCCCGGAACCGCCAAGTGCCTCTTCGGGCTGGATTTCTCCTCTTCGAACTCCTCCGGTAAGCGTCGGGCCATTATCATCGCCGTTGTTTCGGTTTTTTGTTTGTTGGCCTTGGTTCTCTTCGTTGGGCTTTGGGCTTACTTGAGATTGAAAAAGAAAAGGGAGGGTATTGCGAGGGGGAAGGGTACTGAAGTGGGTTCTGGGTTGGGGTTGGATTCCATCAGCCAGAGTACCACTTTGATTCGGTTCACTTTTGAGGAAATTAAAAAGGCCACTAGGAATTTCTCTCGAGACAACATCATAGGAAGTGGCGGTTATGGGAATGTTTATAAAGGAACCCTCTTGGATGGTAGTCAGGTTGCGTTTAAGCGTTTCAAGAATTGTTCTGTTGCCGGGGATGCTAGCTTCACTCACGAAGTTGAGGTTATTGCTAGTGTCAGGCATGTCAACCTTGTTACCCTTAGAGGCTACTGTACTGCCACCACGAATTTAGAGGGTCACCAGAGGATTATTGTCACTGATTTGATGGAAAATGGAAGTCTTTATGATCATTTATTTGGTTCTGCCAAGAAGAACCTCAGTTGGCCCATTCGTCAGAAGATTGCTCTAGGCACTGCTCGGGGGTTGGCTTATTTGCATTACGGGGCACAACCTTCGATTATCCACAGGGATATTAAAGCGAGTAACATTCTTCTTGATCACAAGTTTGAAGCCAAGGTGGCGGATTTCGGGTTGGCCAAGTTCAACCCAGAGGGAATGACGCATATGAGTACCCGAGTGGCTGGAACTATGGGCTATGTTGCTCCTGAGTATGCCTTGTATGGACAGTTGACTGAGAGAAGCGATGTGTTCAGTTTTGGGGTTGTGCTTCTTGAGCTTTTGAGTGGGAAAAAGGCTCTTCAAACGGACCATGATGGTCAACCCTCGGCACTCACTGACTTTGCTTGGGCGTTGGTTAGGAATGGTAGTGCTTTGGATGTTATTGAAGATGGCATCCCGGAACCTGGTCCTCCAGAAGTTCTTGAGAAATATGTGTTGGTTGCTGTGCTGTGCTCTCATCCACAGCTATATGCTAGGCCAACGATGGATCAGGTTGTTAAAATGCTGGAGACTGATGAATCGGTACCCTCGTTGATGGAAAGGCCAATTCCTTTTATTGCTGGGAGGATTGATATCGAGAAATCTGCGCTTAGTAACTCGGGTCAGTTATGCAGTCCAACTGGTTATCAAGCATATACATTACAAGGTCGCCGCATATCTAGTTCTAAGGAGGAGACAGAAGAAGGAAGTTCCGTGTCCGAGGCTGTCACCACAGATTGA 1896 0.5179 MSLPFHAYLIPLLFLTLPTPSLAAVPCPLNITVLRVVGGGARPSFDSGTQCHYILQALHLLQADYLRRSHRFVPPLNASDSCWSTFQSFINEFEPSFDIRASCGLQTAWISQGCMNITTKQQFEATVPAAATQAVQTNCNQSLDNNSPCALCTTKLSTLLSYLTGPTVGNVTDCRAYTSIYAASLSDQYGATDPGTAKCLFGLDFSSSNSSGKRRAIIIAVVSVFCLLALVLFVGLWAYLRLKKKREGIARGKGTEVGSGLGLDSISQSTTLIRFTFEEIKKATRNFSRDNIIGSGGYGNVYKGTLLDGSQVAFKRFKNCSVAGDASFTHEVEVIASVRHVNLVTLRGYCTATTNLEGHQRIIVTDLMENGSLYDHLFGSAKKNLSWPIRQKIALGTARGLAYLHYGAQPSIIHRDIKASNILLDHKFEAKVADFGLAKFNPEGMTHMSTRVAGTMGYVAPEYALYGQLTERSDVFSFGVVLLELLSGKKALQTDHDGQPSALTDFAWALVRNGSALDVIEDGIPEPGPPEVLEKYVLVAVLCSHPQLYARPTMDQVVKMLETDESVPSLMERPIPFIAGRIDIEKSALSNSGQLCSPTGYQAYTLQGRRISSSKEETEEGSSVSEAVTTD 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02070 631 Pfam Protein tyrosine and serine/threonine kinase 290 561 IPR001245 GO:0004672|GO:0006468
Cca03g02070 631 MobiDBLite consensus disorder prediction 610 631 - -
Cca03g02070 631 ProSiteProfiles Protein kinase domain profile. 287 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02070 631 ProSitePatterns Serine/Threonine protein kinases active-site signature. 412 424 IPR008271 GO:0004672|GO:0006468
Cca03g02070 631 PANTHER RECEPTOR-LIKE KINASE IN IN FLOWERS PROTEIN 23 614 - -
Cca03g02070 631 PANTHER OS01G0253100 PROTEIN 23 614 IPR045271 GO:0004714|GO:0006468
Cca03g02070 631 SUPERFAMILY Protein kinase-like (PK-like) 270 574 IPR011009 -
Cca03g02070 631 Gene3D Transferase(Phosphotransferase) domain 1 368 571 - -
Cca03g02070 631 ProSitePatterns Protein kinases ATP-binding region signature. 293 315 IPR017441 GO:0005524
Cca03g02070 631 Gene3D Phosphorylase Kinase; domain 1 261 366 - -
Cca03g02070 631 Pfam SPARK 24 174 IPR043891 -
Cca03g02070 631 CDD STKc_IRAK 293 562 - -
Cca03g02070 631 SMART serkin_6 287 578 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02070 Cca-Chr3 40956503 40958857 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02070 27 608 Receptor kinase-like Gene Family AT2G48010 62.457 0.0 757
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RKF3 Cca03g02070 PK_Tyr_Ser-Thr 1.7e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02070 - - gmx:100819453 1053.51
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02070 03 40956503 40958857 Cca02g01174 02 29278082 29280502 PCT