Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02053 ATGGACAACGCCGAGAGAGAAACCCACAACTTCATGAACGTCCACTCCTTCTCTCAGCTCCCCTTCCTCCGCCCCTCCAAAGATAAACCCGTTCGACTCTTCGGCCAAGACTTCACCGACTCCCACTCCGCACACGCCAACAACACAGACAACGCCGACACTAGCCGCAGGTTCGAGTGTCATTACTGTTGCAGAAACTTCCCCACTTCTCAGGCCTTGGGCGGCCACCAAAACGCGCACAAACGAGAGCGCCAACACGCAAAACGACACCTCCACTCACCCATCCCCATGATGCCTCAAACCACCCTCCCCGATGCCTACGCCTACATGAACTACACCTTCGCTTCTTCCAATGCTGGAAGGTTCTACGGAACCTCCTATTCTCATCAACTTCAACTTCAGCCCATCAATGGAAGCCCATTGGGCTTGTGGCCAATCCCCGCCAACACTGTCACTCATGCCCCGACGAACCCTATTTTGAACGCCGAACGCGCGTTGCCTTTGTTTTCCGCTGAGAACAACGGGATGGGACACTCCGGTTCGCAAAACCGCTTTGTTTATGACACCAAACCCGACCATGGACCACAATTAAGTCCAACAACACATATGGAATGGATTGGAAATGATTCTATGTATAGAGATTGA 645 0.5271 MDNAERETHNFMNVHSFSQLPFLRPSKDKPVRLFGQDFTDSHSAHANNTDNADTSRRFECHYCCRNFPTSQALGGHQNAHKRERQHAKRHLHSPIPMMPQTTLPDAYAYMNYTFASSNAGRFYGTSYSHQLQLQPINGSPLGLWPIPANTVTHAPTNPILNAERALPLFSAENNGMGHSGSQNRFVYDTKPDHGPQLSPTTHMEWIGNDSMYRD 214
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02053 214 ProSiteProfiles Zinc finger C2H2 type domain profile. 58 85 IPR013087 -
Cca03g02053 214 PANTHER ZINC FINGER PROTEIN GIS 1 190 IPR044291 GO:0003700|GO:0009739|GO:0010026|GO:0010090
Cca03g02053 214 SUPERFAMILY beta-beta-alpha zinc fingers 55 86 IPR036236 -
Cca03g02053 214 ProSitePatterns Zinc finger C2H2 type domain signature. 60 80 IPR013087 -
Cca03g02053 214 Pfam C2H2-type zinc finger 57 82 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02053 Cca-Chr3 40801114 40802948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02053 3 152 C2H2 Transcription Factor Family AT2G41940 42.927 3.54e-34 120
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02053 - - pvu:PHAVU_001G144900g 235.343
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02053 03 40801114 40802948 Cca03g02053 03 40801114 40802948 ECH