Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02047 ATGTTGTGCTGCGGAGGTGCAGAGGAGGAGAGTAGCGGTCCCCCTGCAAACCAATACCCCTCTGTACCACCTAGAGGGGGTAGCACATATGGTGGAGGAGGCAATGATAGAGGAGAGCCTAGGGGCAATATGGCAAAGAGTGGTGCTCCGCAGAAAGCATTGCCAATTGAGATACCCTCTATGCCATTGGATGAGTTAAATAGGTTAACAGGAAACTTTGGTACAAAGGCTTTTATTGGTGAAGGTTCCTATGGACGAGTTTACTACGCAAAACTGAGTGATGGTACTGATGCTGCAATTAAGAAGCTGGATACAAGTTCTTCCCCAGAACCTGACAACAGCGATTTCGCAGCTCAGTTATCAGTTGTTTCAAGATTGAAGCACGACAATTTTGTGGAGTTGATTGGATATTGTCTAGAGGCAGAAAACAGAATTTTGGTTTATCAACATGCAAGTCTTGGTTCTTTGCACGACGTGTTACACGGAAGGAAGGGTGTGCAAGGGGCTGAACCTGGTCCTGTTTTAAGCTGGAGCCAGAGAGCAAAAATTGCATTTGGTGCAGCAAAAGGACTCGAGTTTCTTCACGAAAAGGTTCAGCCTTCTATTGTTCATCGCGATGTTAGATCCAGTAATGTCTTACTGTTCAATGACTATGAGGCCAAGATAGCTGATTTCAGCTTGACAAACCAGTCTTCTGACACAGCTGCTCGGCTACATTCAACAAGAGTCTTGGGAACATTTGGCTATCATGCTCCAGAGTATGCCATGACTGGGCAGATAACACAGAAAAGTGATGTTTACAGTTTTGGGGTTGTGCTTTTAGAACTCTTGACAGGAAGAAAGCCTGTAGATCACACAATGCCCAAAGGGCAACAAAGTCTTGTGACTTGGGCAACTCCAAGGCTGAGTGAGGACAAAGTGAAACAGTGTGTGGATCCTAAGCTAAACAATGATTATCCACCAAAGGCTATTGCTAAGTTGGCTGCTGTGGCAGCACTTTGTGTTCAGTATGAAGCTGACTTCAGACCAAACATGACAATTGTTGTCAAAGCCCTCCAGCCACTTCTCAATGCAAAACCGGCTGGTCCTGAGCCTCCTCCT 1101 0.4578 MLCCGGAEEESSGPPANQYPSVPPRGGSTYGGGGNDRGEPRGNMAKSGAPQKALPIEIPSMPLDELNRLTGNFGTKAFIGEGSYGRVYYAKLSDGTDAAIKKLDTSSSPEPDNSDFAAQLSVVSRLKHDNFVELIGYCLEAENRILVYQHASLGSLHDVLHGRKGVQGAEPGPVLSWSQRAKIAFGAAKGLEFLHEKVQPSIVHRDVRSSNVLLFNDYEAKIADFSLTNQSSDTAARLHSTRVLGTFGYHAPEYAMTGQITQKSDVYSFGVVLLELLTGRKPVDHTMPKGQQSLVTWATPRLSEDKVKQCVDPKLNNDYPPKAIAKLAAVAALCVQYEADFRPNMTIVVKALQPLLNAKPAGPEPPP 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02047 367 SUPERFAMILY Protein kinase-like (PK-like) 54 352 IPR011009 -
Cca03g02047 367 ProSitePatterns Protein kinases ATP-binding region signature. 79 102 IPR017441 GO:0005524
Cca03g02047 367 MobiDBLite consensus disorder prediction 1 50 - -
Cca03g02047 367 PANTHER OS03G0226300 PROTEIN 1 365 - -
Cca03g02047 367 ProSiteProfiles Protein kinase domain profile. 73 356 IPR000719 GO:0004672|GO:0005524|GO:0006468
Cca03g02047 367 Gene3D Phosphorylase Kinase; domain 1 42 150 - -
Cca03g02047 367 Gene3D Transferase(Phosphotransferase) domain 1 152 361 - -
Cca03g02047 367 SMART tyrkin_6 73 352 IPR020635 GO:0004713|GO:0006468
Cca03g02047 367 Pfam Protein tyrosine and serine/threonine kinase 77 352 IPR001245 GO:0004672|GO:0006468
Cca03g02047 367 ProSitePatterns Tyrosine protein kinases specific active-site signature. 202 214 IPR008266 GO:0004672|GO:0006468
Cca03g02047 367 PANTHER PTO-INTERACTING PROTEIN 1-LIKE 1 365 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02047 Cca-Chr3 40655169 40657434 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02047 64 358 Trihelix Transcription Factor Family AT5G38560 43.522 3.87e-83 265
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIII Cca03g02047 PK_Tyr_Ser-Thr 7.7e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02047 - - gmx:100786291 678.322
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02047 03 40655169 40657434 Cca03g02047 03 40655169 40657434 ECH
Cca03g02047 03 40655169 40657434 Cca02g00725 02 17382959 17386023 PCT