Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Cca03g02039 ATGGAGCTTGCTCTCACCCTAGGTGACACCCCCAAACCTTTATCTTTTTCTACAAACAATGACTCACTCGGTTTACGCATAGCACTGGCTCACCCTTCCTCAGATCCACCCCTTCAGCTCCACCTTCTTCCTTCCACACCCGTTCTTCCTATTCCACTGGATGATGCCGATGATGGTGCTGCACTTTCGTCCCCCAACAGTGCCATCTCGTCTTTTCATATGGATTTTTGTGTCGGGAACACTACAAAGTCCTGTGACGGTGCCAGTGACGACGATGAAAACGGCTCAACCAGGAAGAAACTCAGACTCTCTAAACAACAATCGGCTTTTCTCGAAGAGAGCTTCAAAGAACACACCACCCTAAATCCAAAACAAAAACTTGCTCTTGCAAAACAACTAAATCTGCGTCCCCGTCAAGTGGAAGTATGGTTTCAGAACAGAAGGGCGAGGACAAAGTTGAAGCAGACAGAAGTGGATTGTGAGTACTTAAAGAGATGCTGTGAGAGTCTAACAGAAGAGAATAGAAGGTTGCAGAAGGAACTGCAAGAACTAAGAGCTTTGAAAACTTGTCAACCATTCTACATGCAACTTCCGGCAACCACCCTCACCATGTGTCCCTCTTGTGAACGGGTTGCCACCAACACTACCGGTGCCGCCGCCACCAACAAAAATAACCCTGCTGCTGCGTTATCCATTGACAAGCCCAGGATATTGCCCTAA 720 0.4764 MELALTLGDTPKPLSFSTNNDSLGLRIALAHPSSDPPLQLHLLPSTPVLPIPLDDADDGAALSSPNSAISSFHMDFCVGNTTKSCDGASDDDENGSTRKKLRLSKQQSAFLEESFKEHTTLNPKQKLALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCESLTEENRRLQKELQELRALKTCQPFYMQLPATTLTMCPSCERVATNTTGAAATNKNNPAAALSIDKPRILP 239
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Cca03g02039 239 SUPERFAMILY Homeodomain-like 87 155 IPR009057 -
Cca03g02039 239 Pfam Homeodomain 98 152 IPR001356 GO:0003677
Cca03g02039 239 PANTHER - 54 229 - -
Cca03g02039 239 CDD homeodomain 98 155 IPR001356 GO:0003677
Cca03g02039 239 CDD bZIP 147 186 - -
Cca03g02039 239 ProSiteProfiles 'Homeobox' domain profile. 94 154 IPR001356 GO:0003677
Cca03g02039 239 SMART HOX_1 96 158 IPR001356 GO:0003677
Cca03g02039 239 PANTHER HOMEOBOX ASSOCIATED LEUCINE ZIPPER PROTEIN 54 229 - -
Cca03g02039 239 SMART halz 154 197 IPR003106 GO:0006355|GO:0043565
Cca03g02039 239 Coils Coil 160 187 - -
Cca03g02039 239 Pfam Homeobox associated leucine zipper 154 188 IPR003106 GO:0006355|GO:0043565
Cca03g02039 239 Gene3D - 102 152 - -
Cca03g02039 239 ProSitePatterns 'Homeobox' domain signature. 129 152 IPR017970 GO:0000981|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Cca03g02039 Cca-Chr3 40567960 40569291 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Cca03g02039 90 237 Homeobox Transcription Factor Family AT4G37790 69.536 4.70e-69 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Cca03g02039 Homeodomain 2.7e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Cca03g02039 K09338 - gmx:100784703 342.043
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Cca03g02039 03 40567960 40569291 Cca03g02039 03 40567960 40569291 ECH
Cca03g02039 03 40567960 40569291 Cca02g00730 02 17535565 17537017 PCT